 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_10832A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
TCP |
| Protein Properties |
Length: 440aa MW: 45125.8 Da PI: 6.9483 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_10832A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 131.5 | 8e-41 | 112 | 225 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85
+++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a++++ + s s++++
Oropetium_20150105_10832A 112 TVAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANFSTLNISMRSGGAN 195
5789*****************************************************************999444444444433 PP
TCP 86 ssg.......kaaksaakskksqksaasalnlakes 114
s++ + +++++++++ + + ++
Oropetium_20150105_10832A 196 SARaspfpalA------LHSHQHHQQHDMKRYREDL 225
33323343331......3333333333222222211 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 440 aa
Download sequence Send
to blast |
MDLGGGGGGG GGGGGGAPSS SNSGGASAGG GGTSGSRGSE QHPHHAFYYT GPAAPGSNTG 60
AVPPPQAQPS PFAGALAIVP TAAAGDQQAQ PSSAAAAGDK KALVPAAAAA GTVAKRPSKD 120
RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAIL AATGTGTIPA 180
NFSTLNISMR SGGANSARAS PFPALALHSH QHHQQHDMKR YREDLFKEDD DRQDPNAPKA 240
REQQQAQAPS AAMWAMAPNT AAPGGAFWML PVSATTAAAA RPAEQPMWSF SGAAAASGTV 300
QAPLQFMSRA TYPSAAGGGM SDTNLGMFAA VNPYSGRGGS EDQQQAADAE QQQPQRQRGG 360
NGGEDEADGD DSGDENHGNN SSHIAVLLSY VQFCFCGWIC MRYVLFLTQQ RSCGRRILET 420
SDPPFLLSCS LLLQPPSAL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT083691 | 1e-95 | BT083691.1 Zea mays full-length cDNA clone ZM_BFb0029C09 mRNA, complete cds. |
| GenBank | KJ726951 | 1e-95 | KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds. |
