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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10729A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 68aa MW: 7866.21 Da PI: 10.8861 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELS+LCdaeva+i+fss+g+lyeys+ Oropetium_20150105_10729A 9 KRIENNTSRQVTFCKRRNGLLKKAYELSILCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.053 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.01E-36 | 2 | 62 | No hit | No description |
SuperFamily | SSF55455 | 6.93E-30 | 2 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGRGRVEIKR IENNTSRQVT FCKRRNGLLK KAYELSILCD AEVALIVFSS RGRLYEYSNN 60 RFVLRIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-20 | 1 | 60 | 1 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10729A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF761668 | 5e-72 | KF761668.1 Triticum aestivum cultivar Triple Dirk F-Japan line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. | |||
GenBank | KF761669 | 5e-72 | KF761669.1 Triticum aestivum cultivar Hayakomugi MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. | |||
GenBank | KF761670 | 5e-72 | KF761670.1 Triticum aestivum cultivar Triple Dirk C line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. | |||
GenBank | KF761671 | 5e-72 | KF761671.1 Triticum aestivum cultivar Chinese Spring Synthetic 5402 line MADS-box transcription factor AGL31 (AGL31) gene, exons 1, 2, and 5 through 7, promoter region and partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960786.1 | 4e-35 | MADS-box transcription factor 13 | ||||
Swissprot | Q2QW53 | 3e-35 | MAD13_ORYSJ; MADS-box transcription factor 13 | ||||
TrEMBL | A0A287EXH2 | 1e-35 | A0A287EXH2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287EXI8 | 1e-35 | A0A287EXI8_HORVV; Uncharacterized protein | ||||
STRING | Traes_3B_87AC5133F.2 | 2e-35 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-36 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10729A |