PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10589A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 309aa    MW: 35722.8 Da    PI: 9.7445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10589AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033243266223
                                EET..TTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                                +C+   C+k+F+ +   + H+r+H
  Oropetium_20150105_10589A 243 TCSheGCDKTFKWPWARTEHMRVH 266
                                68889*****************99 PP
2zf-C2H211.50.00095272298123
                                EEET..TTTEEESSHHHHHHHHHH..T CS
                    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                                y C+   C+++F+  s++ rH r+  H
  Oropetium_20150105_10589A 272 YACTepGCTQTFRFVSDFSRHKRKtgH 298
                                789999*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035518212236IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866212241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-4214240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280214236IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-10228270No hitNo description
Gene3DG3DSA:3.30.160.603.4E-10241266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.5E-4242266IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427242271IPR007087Zinc finger, C2H2
PROSITE patternPS000280244266IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-8260294No hitNo description
Gene3DG3DSA:3.30.160.602.8E-9267295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1272298IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242272303IPR007087Zinc finger, C2H2
PROSITE patternPS000280274298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MISEANHNQL RNFDDHGKHD NVNESEEAPN TQQYQQHELQ NRNKKSSSKR RKGGKTNNFH  60
ELRDENGDID CRLDIDSIIN TTIDDWNDSP PLAFGVVKVE SSVELQGDKA KSGKYKTSYD  120
LSNGNKKLQE IDRKASAKKQ KNGKRNRQFA ENQTEDVDLV QLNNGDESMQ DIWDEFPKQK  180
RDNVKIKSRV KIQTGCDMSF STQQDLSLHK KDICPVKGCR KKFFCHKYLL QHRKVHLDER  240
PLTCSHEGCD KTFKWPWART EHMRVHSGVR PYACTEPGCT QTFRFVSDFS RHKRKTGHSS  300
GKKRKNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-5219530529139Lysine-specific demethylase REF6
6a58_A3e-5219530529139Lysine-specific demethylase REF6
6a59_A3e-5219530529139Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10589A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664493.15e-98PREDICTED: lysine-specific demethylase REF6-like
SwissprotQ5N7124e-56JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A0E0FBA84e-97A0A0E0FBA8_9ORYZ; Uncharacterized protein
STRINGOMERI12G06090.13e-97(Oryza meridionalis)
STRINGOB12G17360.12e-97(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-51relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]