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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_10525A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CAMTA | ||||||||
Protein Properties | Length: 699aa MW: 75958.5 Da PI: 4.6283 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 42.4 | 1.3e-13 | 38 | 72 | 72 | 106 |
CG-1 72 kLKvggvevlycyYahseenptfqrrcywlLeeel 106 L+vg+v+vl+cyYah+een++fqrr+ywlLe + Oropetium_20150105_10525A 38 DLQVGSVDVLHCYYAHGEENANFQRRTYWLLEDKE 72 599****************************9873 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 17.009 | 1 | 90 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-9 | 37 | 72 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 2.24E-5 | 331 | 386 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 6.53E-17 | 446 | 561 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.15E-13 | 447 | 559 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 1.1E-16 | 457 | 562 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.202 | 467 | 561 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.5E-7 | 473 | 562 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.003 | 500 | 532 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.025 | 500 | 532 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1000 | 539 | 568 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
IFHRYYWKLR TGGCGPPKSA RYCQTTKSSP LPLSHRTDLQ VGSVDVLHCY YAHGEENANF 60 QRRTYWLLED KEAEEIAGLS NADSPACSNS FASQSQVASQ TMDAESPISG QISEYEDAET 120 GLAVSLSSFC IICTNVSKAK FGATDNCRAS SRYHPFTEVQ QPVDGIMMNN LLGASVPCAS 180 PNNLGKPFTL PSKPTTASMN NHFVSHNDIS SVFNESGAGF SEPFGEYASG FTEPALHSSV 240 ATMESNNLDD SSHLQTFVSE ALYTNNLTQK EADALCAVGI TSSQAENDSY TDRNFRYPLL 300 KQSSLDLFKM EPDGLKKFDS FSRWMSSELA EVLITGTFLA NKENVEKCKW SCMFGDVEVP 360 AEVLADGSLR SYTPVHHSGR VPFYLLSLGP DDYEKYVLSS GNKSELVDTI NALMLDDKFS 420 NLALPSDEKF SDARDQNLEK SVKEKLYYWL IHKIHDDGKG PNVLGKEGQG VIHLVAALGY 480 DWAIKPIVAA GVNVNFRDIR GWTALHWAAS CGRERTVCAL ITNGAASGAL TDPTPQFPSG 540 RTAADLASEN GYKGIAGFLA ESALTSHLSA LTLKESQVDN VAEICGSAAP ADFAESSSAQ 600 LACVEDSQAE SLKDSLSAVR KSTQAAARIF QAFRVESFHR KKVIEYGDDD CGLSDERTLS 660 LELQNKMLSD SAVVDGSDFM AELEELCRDD GDATMSTI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_10525A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004341 | 5e-90 | AP004341.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0524E08. | |||
GenBank | AP014963 | 5e-90 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 5e-90 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021308917.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X3 | ||||
TrEMBL | A0A1B6QFM1 | 0.0 | A0A1B6QFM1_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G431243_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 5e-83 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_10525A |