 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_10171A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 229aa MW: 25673.4 Da PI: 7.5007 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_10171A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 177.4 | 3.9e-55 | 15 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGfrFhP+dee+v++yL++k+ ++ + + vi++vd++k+ePwdLp+++k +ekewyfF+++d+ky+tg+r+nrat+sgyWk
Oropetium_20150105_10171A 15 LPPGFRFHPSDEEIVTHYLTPKALNRLFAC-LVIADVDLNKIEPWDLPRMAKMGEKEWYFFCHKDRKYPTGTRTNRATASGYWK 97
79*************************999.78***************988999****************************** PP
NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
atgkdke+++ +g lvg+kktLvfy grap+gekt W+mheyrle
Oropetium_20150105_10171A 98 ATGKDKEIFRGRGVLVGMKKTLVFYLGRAPRGEKTPWIMHEYRLE 142
*******************************************85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:1900057 | Biological Process | positive regulation of leaf senescence |
| GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process |
| GO:0000975 | Molecular Function | regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MSEVYQGDEM AQLELPPGFR FHPSDEEIVT HYLTPKALNR LFACLVIADV DLNKIEPWDL 60
PRMAKMGEKE WYFFCHKDRK YPTGTRTNRA TASGYWKATG KDKEIFRGRG VLVGMKKTLV 120
FYLGRAPRGE KTPWIMHEYR LEGKLPPSLP RAAKDEWAVC RVFNKDLAAK QPGQTAAAAT 180
PPASDIEWTD PLTFIEDFLD TQLPPLIDSP PFVKGEAASS SSGAVPGIS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-57 | 4 | 171 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 3e-57 | 4 | 171 | 6 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 3e-57 | 4 | 171 | 6 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
