PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_10068A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 296aa    MW: 30665.4 Da    PI: 7.3003
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_10068AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.44.4e-30148201155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Oropetium_20150105_10068A 148 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 201
                                59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-31145206IPR009057Homeodomain-like
PROSITE profilePS5129410.648145204IPR017930Myb domain
SuperFamilySSF466893.4E-19146205IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23149201IPR006447Myb domain, plants
PfamPF002494.9E-8151200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGEEAADDYD LELLGXXXXX XXXXXXXXXX WETGLPGSDE LTPLSQPLVP PGLAAAFRIP  60
PEPGRTLLDV HRASAATVSR LRLASSSSSA SSFPTFQQAA AAAAAAAGGG GGGGGGGGGG  120
RADEADSSAR EESAAAKESN NTMNSSKRPR LVWTPQLHKR FVDVVAHLGI KNAVPKTIMQ  180
LMNVEGLTRE NVASHLQKYR LYVKRMQGLS NEGPSPSDHI FASTPVPHAL VHEVPAVAMY  240
HHHHHPGGGS MGVAVGMVPM NSSYQHQQSG GGYGGGGGGG GGVSSSYQYH PHATK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-35148204157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_10068A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1651721e-105AC165172.2 Zea mays clone CH201-171E16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817497.11e-103transcription factor PCL1
SwissprotQ94DH34e-85PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A2S3HMQ41e-102A0A2S3HMQ4_9POAL; Uncharacterized protein
STRINGSi002653m2e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.34e-49G2-like family protein