PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09845A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 399aa    MW: 41688.6 Da    PI: 4.8648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09845AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12212254754
                                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Oropetium_20150105_09845A 212 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 254
                                79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17208276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9211254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-13212258No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16212268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.59E-5326367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDDSAPPPPP PPKMDEIAGA GAGGGDWAGY LGSDAMMAAN PFPAFPFPRD ILSTPASASM  60
LLAMDSAAFF DLHAGFPSSS ATAPALPAFH DFGSSAIPFD DPAAQFLGAX XXXXXXXXXX  120
XPAVAAAEGQ KGSFLLTKAP ALTAPMSMGS MAAMGWDDDE EIEQSLDLDA SSMAITASLE  180
NAAGAAPSGG AGTGGGGGRG KNKKGMPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR  240
ASILGDAIEY LKELLQRVND LQIEIESASN SPLVGPTSAS FHPSTPTLQT FPGRVKEELC  300
PAAFPSPNGQ QATVEVRMRE GHAVNIHMFC ARKPGILLST MRALDSLGLD IEQAVISCFS  360
GFAMDIFRAE RCGDGPGPVP EDIKAVLMHS AGLQNALM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197205GRGKNKKGM
2213220ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09845A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971151.11e-162transcription factor ICE1
TrEMBLA0A0A9EZL11e-165A0A0A9EZL1_ARUDO; Uncharacterized protein
STRINGSi001874m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.47e-95bHLH family protein