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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Oropetium_20150105_09839A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
Trihelix |
Protein Properties |
Length: 290aa MW: 31117.8 Da PI: 8.0843 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_09839A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 69.2 | 7.9e-22 | 25 | 99 | 1 | 83 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
rWt++e+l+Li+arr +e+ r p+W++vs+++r++g+ r+p qC+++w nl+++ kki ++e+k++ +ss f
Oropetium_20150105_09839A 25 RWTRHETLVLIQARRATEQPAVRV---RPKWAAVSAYCRRHGVDRGPMQCRKRWGNLSWDLKKIVAWEGKKHGQSS-----FW 99
8*****************988887...8*****************************************9854444.....33 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MENSPPAVEA AAAAASTTPR SRLPRWTRHE TLVLIQARRA TEQPAVRVRP KWAAVSAYCR 60 RHGVDRGPMQ CRKRWGNLSW DLKKIVAWEG KKHGQSSFWD MRGDERRARL LPSSFDREVY 120 DAIVGGAAAA ADDAGEEEVP DFGEEVDEQP PIMVMPISAR RYEPPPPASS EHQCSNPVTE 180 SAKKKASGGA ASDKNSTSQD VGGGGGEGYK DSDATFVAGA AAEDGAATGT PVVSIGKQVI 240 EALVTGNRAL AQHLEAQRRS WAVDREQRTA LLAALNRLGD AVTRIADKL*
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