PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09812A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CAMTA
Protein Properties Length: 845aa    MW: 95294.7 Da    PI: 6.9468
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09812AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.21.3e-52131293118
                       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyY 85 
                                +e k+rwl+++e+++iL+n+e ++++++++++p+sgs++Lynr+++r+fr+DGy+w+kk++gk+ +E+he+LKv+++e+l+cyY
  Oropetium_20150105_09812A  13 QEvKTRWLRPKEVLQILQNHEWFTIAHKPAHKPPSGSWFLYNRRVLRFFRNDGYTWQKKRNGKSSNEAHERLKVDNIEALNCYY 96 
                                6779******************************************************************************** PP

                       CG-1  86 ahseenptfqrrcywlLeeelekivlvhylevk 118
                                a++++nptfqrr+yw+L+ ++++ivlvhy++v+
  Oropetium_20150105_09812A  97 ARGDQNPTFQRRIYWMLDPAYDHIVLVHYRDVQ 129
                                ******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.7238134IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-6511129IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4615128IPR005559CG-1 DNA-binding domain
CDDcd001021.23E-4311394No hitNo description
Gene3DG3DSA:2.60.40.109.9E-9311397IPR013783Immunoglobulin-like fold
PfamPF018331.0E-5312384IPR002909IPT domain
SuperFamilySSF812961.68E-13312392IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.208.1E-15460603IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-14469481IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.35E-14509605IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.777511576IPR020683Ankyrin repeat-containing domain
SMARTSM002484700511540IPR002110Ankyrin repeat
PfamPF136372.8E-9513564No hitNo description
CDDcd002045.27E-8513560No hitNo description
SMARTSM002480.0076544573IPR002110Ankyrin repeat
PROSITE profilePS5008810.392544576IPR002110Ankyrin repeat
SMARTSM0001551665687IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.163666695IPR000048IQ motif, EF-hand binding site
SMARTSM000150.023705727IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.108706733IPR000048IQ motif, EF-hand binding site
PfamPF006120.017707726IPR000048IQ motif, EF-hand binding site
SMARTSM000150.057728750IPR000048IQ motif, EF-hand binding site
PfamPF006120.035730750IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.102730757IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MQQQGFDVHK LEQEVKTRWL RPKEVLQILQ NHEWFTIAHK PAHKPPSGSW FLYNRRVLRF  60
FRNDGYTWQK KRNGKSSNEA HERLKVDNIE ALNCYYARGD QNPTFQRRIY WMLDPAYDHI  120
VLVHYRDVQE GSISVSARND SSTSNQNGSA SRAEVHGSPG WTSELTAPCP NSCSPGSVEE  180
VSSRTMTINN EANNASPSNR MEEKAALRKL KMQLSLEDKD DYDVHTEEIP SNNEPIVIRG  240
IENGELGNCT NLDDIFTVLD FSENHTKEAG TCSVPCAIDV LKSSEAWLEE DQLEAILHSG  300
AMTLTESQWF RIDEVSPEWG FRSESTKVII IGDFLCNPSD SAMMFGDVKV PVETVKKGVI  360
RCHTPCLDAG KVRMYMIDVN GKPCSEEREF EFLEKPTSMV DGRKPWNEEQ DFIDQKPTKS  420
NKELLLLLNY MQMLFDGHGY ELFSKFSLPL SNLDCGFQVN QIDIVKKTNE LLDHEISVNH  480
VMEVLLNDKF EHWLSSKVEQ SSDGTHLLPK QYHSVIHTVA ALGYEWALKP LLSSGVPINY  540
RDANGWTALH WAARFGRERM VAALVASGAA AGALSHPTSE DPAANTPASI ASAYGFSGLS  600
AFLSEAQLIS HLDSLESKEN AKCEVGASGG GILCATDRIW DKGPHVSGGT GDQLALQDSL  660
GGIRNAVQAA SRIQAAFRVF SFRKKQETAL QNTNSCDTDT VSQGILEKAA LSIQKNFRCW  720
KKRREFLKVR KNIIRIQARV RAHQERNKYK ELLKSVGVLE KVMLRWYRKG VGLRGFNSGV  780
MPMDEDVEDV VKVFRKQRVE TAINEAVSRV SSIIDNPFAR QQYRRMLEMY QQAKKYNNMA  840
VNQV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09812A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971097.10.0calmodulin-binding transcription activator 4
TrEMBLA0A0A9AIS60.0A0A0A9AIS6_ARUDO; Uncharacterized protein
STRINGSi000282m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.11e-133ethylene induced calmodulin binding protein