PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09805A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family SBP
Protein Properties Length: 367aa    MW: 38145.4 Da    PI: 8.4206
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09805AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.12.2e-4280156278
                                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                C vegC+adls++++yhrrhkvCe+hsk+p v+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+
  Oropetium_20150105_09805A  80 CSVEGCAADLSKCRDYHRRHKVCEAHSKTPIVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNRRRRKPQP 156
                                **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3377141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18877154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-4078159IPR004333Transcription factor, SBP-box
PfamPF031108.9E-3180153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSS GAATGGGALD LKLGGPTSWK ASTVAAAAAA APLLPPPPSS  60
SAPAKRPRSG QALHAVAPPC SVEGCAADLS KCRDYHRRHK VCEAHSKTPI VTVAGQQQRF  120
CQQCSRFHLL GEFDEEKRSC RKRLDGHNRR RRKPQPDPLN PGALFANHHG VARFASYPQL  180
FSAAPSIVKT ETDAFHDHYY PAVHLGNGGG GASLFNGKDR KNFPFLTHHG GNAASAMGCQ  240
PFTITPSSES SSKQSDGNCA LSLLSDNQTP AQLIIPTAQP LGAAAALQYC NAEDGDVSLT  300
GMSYTPTSAG GNKQASIVAT SAGHTAAAAA SPAPATQLQY HGYYNHVNGG GDQGNPDGAT  360
LPFSSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29801531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136153KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09805A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814120.11e-151squamosa promoter-binding-like protein 2
SwissprotQ0JGI11e-121SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A2T7DCF31e-151A0A2T7DCF3_9POAL; Uncharacterized protein
STRINGPavir.J02262.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-31SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]