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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_09764A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
GeBP |
Protein Properties |
Length: 401aa MW: 43019.7 Da PI: 4.7239 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_09764A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 97.5 | 1.2e-30 | 85 | 184 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfs 81
lfqrlw++e e+++L+G+++f+a++g+ +++ d+ fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g ++f+
Oropetium_20150105_09764A 85 LFQRLWTDEEELLILRGFLEFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCASRmAAQGAAFAFR 168
79************************99877778*************************************99889******** PP
DUF573 82 kehdqkifelskkiWg 97
++h+ i+++++ iW+
Oropetium_20150105_09764A 169 SAHEGAIYDVARHIWR 184
***************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MAADNDPAAA AASSSTGDED DEGTDTDASN SDRAAPQDQD QDRPLVPDAA PALLRCPAAT 60 EPTGEVPQPP PPPPQPATTD ESRRLFQRLW TDEEELLILR GFLEFTARRG TTFASHQYDT 120 GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCASRMAA QGAAFAFRSA HEGAIYDVAR 180 HIWRPAVRRD CAGGGVDASD EDDINPAAAX XXXXXXXXXE MPGAVEDGSA PAHTPKGRGG 240 RRVKRKTLQE LETHALPATA SVLMSNDAVQ QPLVVAMENV TPMNSQLPPV VAPEPSPALA 300 VASGATEDAV RAILSPLLRE LVSSITVHGQ TGLGLGLNMG FGGVDILSLG LGVAGSSPGV 360 SGDDKWRQQQ ILELEVYLKR IELVREQVTA ALQELKSSES *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT065406 | 1e-138 | BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds. |
GenBank | JX428457 | 1e-138 | JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 2e-28 | DNA-binding storekeeper protein-related transcriptional regulator |