PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09725A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 876aa    MW: 93967.9 Da    PI: 7.8352
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09725AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0989115127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++ C +++rtG C +G+rC+++H++
  Oropetium_20150105_09725A  89 PGEADCGYYLRTGGCGFGERCRYNHPR 115
                                57899********************96 PP
2zf-CCCH23.97.5e-08145164827
                                GGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                                +f +tG Ck+G++Ck++H++
  Oropetium_20150105_09725A 145 YFVKTGSCKFGSNCKYHHPK 164
                                899***************96 PP
3zf-CCCH38.91.5e-12184209227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++C+++++tG+Ck+G++CkF+H++
  Oropetium_20150105_09725A 184 GEKECSYYMKTGQCKFGSTCKFHHPE 209
                                7899********************96 PP
4zf-CCCH37.44.2e-12287313127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++C++++rtG Ck+G++Ck++H++
  Oropetium_20150105_09725A 287 PGQPECQYYMRTGDCKFGATCKYHHPR 313
                                5789*********************96 PP
5zf-CCCH32.21.8e-10336359427
                                ---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 +C ++a++G+C+yG  Ck+ H++
  Oropetium_20150105_09725A 336 QPCTYYAQNGYCRYGVACKYDHPM 359
                                69********************95 PP
6zf-CCCH34.72.9e-11476502127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++ C +++rtG C yG+rC+++H++
  Oropetium_20150105_09725A 476 PGEADCTYYLRTGSCAYGERCRYNHPR 502
                                57899********************96 PP
7zf-CCCH36.67.7e-12525551127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ++++lC ++a++GtCk+G++Ck+ H++
  Oropetium_20150105_09725A 525 PGQPLCEYYAKNGTCKFGSNCKYDHPR 551
                                589**********************96 PP
8zf-CCCH32.51.4e-10571594326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                +++C+++ +tG+Ck+G++CkF+H+
  Oropetium_20150105_09725A 571 EKECSYYIKTGHCKFGATCKFHHP 594
                                679********************9 PP
9zf-CCCH37.44.3e-12722748127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                +++++C ++++tGtCk+G++Ck++H++
  Oropetium_20150105_09725A 722 PGQPECEHYMKTGTCKFGPTCKYNHPQ 748
                                5789*********************97 PP
10zf-CCCH30.75.2e-10770794327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                  +C ++a+ G+Ck+G++CkF H++
  Oropetium_20150105_09725A 770 SQPCAYYAQHGFCKFGPTCKFDHPM 794
                                679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-488115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.26388116IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-790115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-593116IPR000571Zinc finger, CCCH-type
SMARTSM003560.79141164IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5145164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.606145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812182210IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6182209IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10184209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6185209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4188208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319286314IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6286313IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5290314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4292313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211332360IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5333361IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8336359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4336357IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122475503IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-6475502IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-9477502IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6479504IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5481503IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.859524552IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7524551IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9526551IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5527552IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5529551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084568596IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5568596IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-4570595IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-7571594IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4574594IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315721749IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6721748IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9723748IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5725748IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4727746IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-6767794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244767795IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7769794IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5769795IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4771792IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MDPHADAAGE GAEGGRAPSP GGTGLEGIIY ISRRPYGGRI SVDSELTCWR VNACVVAGPM  60
WRLGLDGTGG GGGGEGEEEE EAARLPERPG EADCGYYLRT GGCGFGERCR YNHPRDRGGT  120
EVTSAEVQRM GQYQTSLNDW VNQYYFVKTG SCKFGSNCKY HHPKQDESVQ SVLLNNSGFP  180
LRPGEKECSY YMKTGQCKFG STCKFHHPEF GAPVTPGIYP PLQSSPASVN PVTSGGAQQT  240
VQAGPLYGIG HHGSATTVAY GGPYISYSPS TGQSSNNQQE NVFPERPGQP ECQYYMRTGD  300
CKFGATCKYH HPRDLSAPKS NYMFSPLCLP LRPGAQPCTY YAQNGYCRYG VACKYDHPMG  360
TLGYSSSALP LSDVSIAPYP IGYPVAALPP SSSSPDLRPD YISTKDQSVN QVASPLAAPE  420
PVSAILPKGG FPPDTIMRAQ TSTTGADSSS PGEALQKIAL GGEEAAAAAA RLPERPGEAD  480
CTYYLRTGSC AYGERCRYNH PRDRRSTAVN GVGRPTSAVE YPERPGQPLC EYYAKNGTCK  540
FGSNCKYDHP REGGFVPVAL NRSGYPLRHG EKECSYYIKT GHCKFGATCK FHHPDLDVAE  600
TSNIYPPVQQ SAISSAHPYP HLASMQMGRP PFVPGSFLPS SYPPMMLPST VMPMQGWNPY  660
IPPMNQATPA GGHQTVQAGN PYGLSHQGPT SSASYGSQYA PLYPSTGPSS SNKQGYAYPE  720
RPGQPECEHY MKTGTCKFGP TCKYNHPQYF SAPNSNYMLN FLGLPLRPGS QPCAYYAQHG  780
FCKFGPTCKF DHPMNPSVSS LTDVPVAPYP LSYAVGPMAQ SSSDLRPQYS LNKDATANQP  840
VPGTTYGHAG SVSKVYAPHT LIRSPASTAA GMQAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09725A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566542.20.0uncharacterized protein LOC100827764
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0D9UZ820.0A0A0D9UZ82_9ORYZ; Uncharacterized protein
STRINGLPERR01G09410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.33e-91C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]