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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_09619A |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
MYB |
| Protein Properties |
Length: 342aa MW: 36567.6 Da PI: 8.0706 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_09619A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.6 | 5.3e-17 | 67 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++
Oropetium_20150105_09619A 67 RGHWRPAEDAKLKELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 112
899*****************************.***********996 PP
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| 2 | Myb_DNA-binding | 52.6 | 1e-16 | 119 | 163 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r ++++eE+e+l+ a++ +G++ W++ ar ++ gRt++ +k++w+ +
Oropetium_20150105_09619A 119 RRAFSEEEEERLLAAHRAYGNK-WALLARFFP-GRTDNAVKNHWHVL 163
678*******************.*********.***********987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MAGFFGPVPP APVLPPFLQD QQQQQQVVAE DVYGRVDEVE EDGGAGHVGH VGGGGGGAVV 60
QGKLCSRGHW RPAEDAKLKE LVAQYGPQNW NLIAEKLDGR SGKSCRLRWF NQLDPRINRR 120
AFSEEEEERL LAAHRAYGNK WALLARFFPG RTDNAVKNHW HVLMARKQRE QSGSLRRRKX 180
XXXXXXXXXX XAPSPTAPPA QQQQFAPVVV LHHHHYGSPP SFHGAGAGAG APASTQDAAA 240
TAAAATRAYS AGGDSDETAS TCTTDLSLGS APCFYQSYDM VPRAAAAPAP SAFAHSMRSA 300
FSAPSPAQHH QHQEAASRSR AAGSDNPGAL PFFDFLGVGE T*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
| Publications
? help Back to Top |
- Leonard LM,Follette VM
Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
Annu Rev Sex Res, 2002. 13: p. 346-88
[PMID:12836736] - Wang L,Li X,Chen Z
Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
[PMID:19135473] - Wang L,Huang H,Wei Y,Li X,Chen Z
Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
[PMID:19549538] - Zhang H, et al.
Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
Plant Cell, 2010. 22(3): p. 672-89
[PMID:20305120] - Zhang H, et al.
Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
[PMID:23256151] - Zhu X, et al.
Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
Plant J., 2015. 82(4): p. 570-81
[PMID:25754973] - Li X, et al.
Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
Plant Cell Environ., 2015. 38(10): p. 2171-92
[PMID:25828772] - Shaar-Moshe L,Hübner S,Peleg Z
Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
BMC Plant Biol., 2015. 15: p. 111
[PMID:25935420]
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