PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_09501A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

LBD

Protein Properties

Length: 454aa MW: 47790.4 Da PI: 4.326

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09501A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	50.1	8.3e-16	175	241	1	66
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamss.lvyeAe 66 +CaaC + +r+C+++C++apyfp ++p k++ v+k F+a++v +ll++l+e ++ +a+ lv A+ Oropetium_20150105_09501A 175 RCAACSFCQRTCTPECIYAPYFPRDDPGKYKTVQKAFSAHHVGRLLRKLREPDKCAAFVDlLVNTAN 241 6************************************************887766665540444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.479	174	276	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.1E-14	175	242	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDGRKGKTPV LKQEAGGAES ASTTHPTPSG SSEPDGVLAP DFAPNGDPER EGSAAMEDDE 60 LVAWLEEEMA ASADESSSGV MAPQEVESAQ PVTGAQEPAS DGSGVMAPQE VESAQPVTGA 120 QEPASDGYAH AAPVASVLQQ YMAAGGVPGP SLPEATDDQG KGPATTKSSK ERRPRCAACS 180 FCQRTCTPEC IYAPYFPRDD PGKYKTVQKA FSAHHVGRLL RKLREPDKCA AFVDLLVNTA 240 NANPSRQRVQ KLHEIERMLP AEWIRQAMPE ASSSRGAAGT MQAGGSVAAE RLNQHQQQLQ 300 NAEVARQAMP EASSSRGAAG TMQIACRGTE LTTAASLARQ QDIERQFEML QQPDWSKNLD 360 YTTPEFASTQ TTPPQQDMAG GQQGAGDVNA STMPGSGSGA PSMPLLVEQP PQSSGTQGEA 420 SQPPVQNDGG EQDESFDDLL AYFTAPYPEK KDD*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDGRKGKTPV LKQEAGGAES ASTTHPTPSG SSEPDGVLAP DFAPNGDPER EGSAAMEDDE  60
LVAWLEEEMA ASADESSSGV MAPQEVESAQ PVTGAQEPAS DGSGVMAPQE VESAQPVTGA  120
QEPASDGYAH AAPVASVLQQ YMAAGGVPGP SLPEATDDQG KGPATTKSSK ERRPRCAACS  180
FCQRTCTPEC IYAPYFPRDD PGKYKTVQKA FSAHHVGRLL RKLREPDKCA AFVDLLVNTA  240
NANPSRQRVQ KLHEIERMLP AEWIRQAMPE ASSSRGAAGT MQAGGSVAAE RLNQHQQQLQ  300
NAEVARQAMP EASSSRGAAG TMQIACRGTE LTTAASLARQ QDIERQFEML QQPDWSKNLD  360
YTTPEFASTQ TTPPQQDMAG GQQGAGDVNA STMPGSGSGA PSMPLLVEQP PQSSGTQGEA  420
SQPPVQNDGG EQDESFDDLL AYFTAPYPEK KDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09501A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	3e-13	LBD family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09501A