PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_09483A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YA | ||||||||
Protein Properties | Length: 240aa MW: 25743 Da PI: 10.4127 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 85.5 | 8e-27 | 113 | 170 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekk..ldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVNaKQ+++Il+RR +Rak+ +e++ + + +rkpylheSRh hAlrR+RgsgGrF Oropetium_20150105_09483A 113 AVYVNAKQFKGILRRRLARAKAPRERRggVVSMKRKPYLHESRHLHALRRARGSGGRF 170 69***********************9999679*************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.4E-28 | 109 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 31.408 | 110 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.7E-20 | 113 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.8E-24 | 114 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 5.7E-20 | 147 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEYQEHGIGF PLQQDAAAAK FPFISSAGGS SYPGKELAFH EPSAPTTLAY PPWQDYKFKL 60 ALGRSSLLGV CNADQRQSYG VCSTFGAHVT ETYKKHGRAK VLLHPVIAVE EPAVYVNAKQ 120 FKGILRRRLA RAKAPRERRG GVVSMKRKPY LHESRHLHAL RRARGSGGRF LNTRNIVAGE 180 LDGDAGSGGG VPTPRSAAAF INSFGSENAG DAPEQAARPV QDAAGDFLSS PRTNEGGRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 7e-15 | 111 | 172 | 2 | 61 | HAPB protein |
4g92_A | 7e-15 | 111 | 172 | 2 | 61 | HAPB protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_09483A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799912.1 | 7e-39 | nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A0A9ILA9 | 1e-61 | A0A0A9ILA9_ARUDO; Uncharacterized protein | ||||
STRING | LPERR07G03140.1 | 5e-37 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14663 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 4e-18 | nuclear factor Y, subunit A2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_09483A |