PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 421aa MW: 45394.3 Da PI: 7.8374

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_09313A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.7e-32	248	303	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Oropetium_20150105_09313A 248 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 303 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.364	245	305	IPR017930	Myb domain
SuperFamily	SSF46689	2.22E-17	245	306	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	246	306	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-27	248	303	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-6	250	301	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MEMDPPPPPP QSVHAAAGDR RRCREYLLAL EEERRKIQVF QRELPLCLDL VTQTIERMRS 60 QVDGVGSEET VSDHGPVLEE FMPLKPSLSL SSSEEEHDSA RDANRVVVGK KEDTAAPPPE 120 TKKATPDWLQ SVQLWSQEPL HHKVPYSLKP NFCVTELVPC KPVALKARKS GGAFQPFEKE 180 KRVEVPASST TAAAAASSAV VGEDDSGGDK AASVDDTAEK HGSDKETSKD ASNKGKDKEG 240 LSPNCNRKPR RCWAPELHRR FLQALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY 300 RLHTRRPNST VQSSSPSAAP PAPQFVVVGG IWVPXXXXXX XXXXAAAAAQ PPVQQLAADA 360 PGSASTLYAP VATLPSGSEQ QLQSVQRQPS RCSESRRSGS AGDARSASPA MSSSSQTTSA 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MEMDPPPPPP QSVHAAAGDR RRCREYLLAL EEERRKIQVF QRELPLCLDL VTQTIERMRS  60
QVDGVGSEET VSDHGPVLEE FMPLKPSLSL SSSEEEHDSA RDANRVVVGK KEDTAAPPPE  120
TKKATPDWLQ SVQLWSQEPL HHKVPYSLKP NFCVTELVPC KPVALKARKS GGAFQPFEKE  180
KRVEVPASST TAAAAASSAV VGEDDSGGDK AASVDDTAEK HGSDKETSKD ASNKGKDKEG  240
LSPNCNRKPR RCWAPELHRR FLQALQQLGG SHVATPKQIR ELMKVDGLTN DEVKSHLQKY  300
RLHTRRPNST VQSSSPSAAP PAPQFVVVGG IWVPXXXXXX XXXXAAAAAQ PPVQQLAADA  360
PGSASTLYAP VATLPSGSEQ QLQSVQRQPS RCSESRRSGS AGDARSASPA MSSSSQTTSA  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-13	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-13	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-13	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-13	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-13	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_09313A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate. {ECO:0000269\|PubMed:23324170}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091266	1e-103	FP091266.1 Phyllostachys edulis cDNA clone: bphylf038j06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954868.3	1e-165	transcription factor NIGT1
Swissprot	Q6Z869	1e-122	NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBL	A0A0A9G3F3	1e-172	A0A0A9G3F3_ARUDO; Uncharacterized protein
STRING	Si019945m	1e-167	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6470	37	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	2e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_09313A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sawaki N, et al. A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice. Plant Cell Physiol., 2013. 54(4): p. 506-17 [PMID:23324170]