PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09268A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 423aa    MW: 46297.5 Da    PI: 5.2809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09268AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM576.5e-18101371128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                lppG+ F+P+ e+lv+ yL +++ g++  + ++ i+       + Pw+L  ++ ++e+ e yfF + d+k       +r+   g
  Oropetium_20150105_09268A  10 LPPGVIFRPESEQLVQLYLVPRACGQPAAIPSIvIEAEgTGAALAPWELLaRHGRTEDGEAYFFDRIDEK-------SRICGGG 86 
                                79*************************77766547777456788*****834555566799***999886.......6888999 PP

                        NAM  82 yWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wk   ++ +  +      ++e+ + k+ + +++gr+++ ++t Wvmhey++
  Oropetium_20150105_09268A  87 GWKWISQQDTHDRVlvlpgGEEVLWNKRNFNLHRGRKRS-SSTGWVMHEYTI 137
                                999554422222113346788889***********9998.7*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-262149IPR003441NAC domain
PROSITE profilePS5100525.95210152IPR003441NAC domain
PfamPF023651.2E-1111137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSMAARALGL PPGVIFRPES EQLVQLYLVP RACGQPAAIP SIVIEAEGTG AALAPWELLA  60
RHGRTEDGEA YFFDRIDEKS RICGGGGWKW ISQQDTHDRV LVLPGGEEVL WNKRNFNLHR  120
GRKRSSSTGW VMHEYTITSP PCPVKLCHVV FCGRGQNRQR VPDNVDAGQS KRAAAGAPSL  180
SEASTTTFQD QELLLAPVGQ DQERFLSNCQ QPHGFGQEQL QIYQGSSSVL TCSGSVVGSS  240
QGTSVGNQEL PVPLRPDQES FLNSQQPYGF NQERLQIISS VLAFWDTEVG SSQETCAGNQ  300
KLLPLGRQDQ ESFLNQQQPH GFNQEQLHCY EGSSVLTFGG SEVGPSQDTC PGQEELAYNQ  360
QQSQDHHLYA AYGALIASDT GASREPPTGQ DLAPELKLRQ ELNRSLAIQA KEEPCTMPPR  420
RR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_09268A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.18e-12NAC domain containing protein 53