PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08972A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 606aa    MW: 65767.3 Da    PI: 4.5399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08972AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-1393138555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + ++Er RR+++N+++  Lr+++P+      +K++Ka+i + A+eYI +Lq
  Oropetium_20150105_08972A  93 NIIMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 138
                                5689*********************7.....7******************9 PP
2HLH12.40.00034104283755
                                -STCHHHHHHHHHHHHHHH CS
                        HLH  37 KlsKaeiLekAveYIksLq 55 
                                 ++Ka+i++ A+ YI +Lq
  Oropetium_20150105_08972A 410 QMDKASIVRDAIAYIEKLQ 428
                                589***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.92988137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1692151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-1492142No hitNo description
PfamPF000101.8E-1093138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1594143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1694151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-5409443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MDPEMGGESF EYYWEMQRIL DSDEFVSSYM GSGGGGGACE DAASYYDSSS PDGSHSSSAA  60
PHPLPPVGAE GGGDNKEDGG AVGGGGAAGA NKNIIMERDR RRKLNEKLYA LRSVVPNITK  120
MDKASIIKDA IEYIEQLQAE ERRMLQEVEA VSGAGEYEYD FNDDGVILQA ERSKKMKRAE  180
SVPSLTAAPA APVELLELRV VEAGDRVLVV SVTCSKRRDA MARVCRAIEE LRLRVITANI  240
TSVAGCLMHT VFVEYIAMEM ESSLLGVGFD FYWPPPPPHL RLDANDLPPP AIGSMFDMSG  300
GPYAYREDSN SPEDYXXXXX XXXXXXXXXP PPQHRPGGLG GAVASKNMVM ERVRXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXLVTTDI PRARLDGRVQ MDKASIVRDA  420
IAYIEKLQDE ERRALAEISA LESSSSFSSS PCPXXXXXXX XXXXAEGAVV AACLAAAVDD  480
AADSGFVFPV RKRPRRAPDG DDAPPPPPLQ ILEVEVSEAG EKVAVVTVRC SRGRDAVAKV  540
CLALEPLIRL RVVTATVAAV GDAVVHTMFV QTTEEMGGAQ LKETVEAALA QFDMTGRPLN  600
PISFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08972A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697843e-75EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823722.14e-94transcription factor bHLH35-like
TrEMBLA0A368RRU97e-94A0A368RRU9_SETIT; Uncharacterized protein
STRINGSi010413m6e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-43bHLH family protein