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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08796A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | CAMTA | ||||||||
Protein Properties | Length: 1012aa MW: 112836 Da PI: 5.9177 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 57.5 | 2.8e-18 | 27 | 133 | 20 | 117 |
CG-1 20 nfekheltlelktrpksgsli...Lynrkkvryfrk.....DG..yswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 n+e++ +t e++++p+s ++i ++ +++ yf++ G + + ++ + d ++L vg+v++l+cyYah+e+np Oropetium_20150105_08796A 27 NHERFPITPEPPKKPPSIAYIpqdFFIFQQMPYFKNivpsaGGslFLYNRRVNSTNKLLDTKRL-VGNVDALSCYYAHGEQNPC 109 5666666666666666655543333333444455543333222324455555554444455555.9****************** PP CG-1 94 fqrrcywlLeeelekivlvhylev 117 fqrrc+w+Le ++e+ivlv+y+ev Oropetium_20150105_08796A 110 FQRRCFWMLEPAYEHIVLVQYREV 133 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 26.028 | 1 | 139 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.8E-14 | 27 | 132 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.7E-11 | 37 | 134 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.5E-6 | 435 | 524 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 1.6E-6 | 435 | 512 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 2.24E-15 | 466 | 510 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.24E-15 | 630 | 727 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 8.6E-17 | 630 | 725 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.91 | 632 | 724 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.05E-13 | 637 | 724 | No hit | No description |
Pfam | PF12796 | 6.1E-7 | 648 | 725 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.354 | 665 | 697 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.4E-4 | 665 | 694 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3400 | 704 | 733 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 27 | 785 | 807 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.529 | 786 | 815 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 6.37E-6 | 843 | 893 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.73 | 846 | 875 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 23 | 847 | 867 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.032 | 848 | 866 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 1.7E-6 | 868 | 890 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.64 | 869 | 897 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.4E-5 | 870 | 890 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1012 aa Download sequence Send to blast |
MQFFWSIFFQ QFGAVPSYHS IISAQENHER FPITPEPPKK PPSIAYIPQD FFIFQQMPYF 60 KNIVPSAGGS LFLYNRRVNS TNKLLDTKRL VGNVDALSCY YAHGEQNPCF QRRCFWMLEP 120 AYEHIVLVQY REVAEGRYYS SLLSNGPPES HSSLRHSNAI HGNQCHNSPS GISEGSESYQ 180 SYSNLSSLTE VTSYSMNKEH NRDSKTLLSI PELGQTFLEQ NADVYRADNC NMANKSGLNV 240 ALKKIAEQLS LGDDDDDYIY SNQAQPLGST KNVEAGADNQ LTTRPEGIQN GLGRNIAPSW 300 EDMLHCSSGL PTSSIYQLDS QYQHNLEHQQ PGGMDSSDLR IQLSAAKRFL LGPEDSIESP 360 SSNFELENVG NSGTGTHDGR LESSLNPDWK TRALLAFQRN SQGSQIEELF GHGQFEPSTR 420 ADSRLTLGQK RLFNIREISP EWAFSYEITK VIITGDFLCD PLNSCWAVMF GNSEVPAKMV 480 QPGVLRCYTP LHSSGKLTLC ITSGNREVCS EVKDFEFRAQ PAASNLTEIA PSSRILKSNE 540 EILLVAKFAR MLLCENESSD PSGDDSQCKQ CPKLKMNKEH WDQLIDELKL GCEHPLATID 600 WIMEELLKSN LQQWLSTKLQ AYNGAACPLS KHDQGIIHLI CALGFEWALS SVLNAGVGIN 660 FRDSNGWTAL HWAAYFGREK MVATLLAAGA SATAVTDPTA QDPVGKTAAF LASEQGHMGL 720 AGYLSEVSLT SHLASLTIEE SEISEGSAGV EAERAVESIS QRSAQQKGGT EDELSMKDSL 780 AAVRNAAQAA ARIQNAFRAF SFRKRQQKTA RLKDEYGMTQ EDIDELAAAA SSRSYNQTHA 840 LSGQFYDKAA VSIQKKYKGW KGRKNFLNMR RNAVKIQAHV RGHQVRKKYK TFVSTVSVLE 900 KVILRWRRKG HGLRGFRAEQ PAMIDAEEEE EDDDVDFDDD EATRIFRRQK VDEALKEAVS 960 RVLSMVDSPE ARMQYRRMLE EFRQATAESG GSEEVTSLIN SEVVGLDSFM H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08796A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823459.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X1 | ||||
Refseq | XP_025823460.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X2 | ||||
TrEMBL | A0A2T7CUC9 | 0.0 | A0A2T7CUC9_9POAL; Uncharacterized protein | ||||
STRING | Si009249m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6238 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-145 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08796A |