PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08756A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 329aa    MW: 35586.7 Da    PI: 10.3923
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08756AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.21.4e-2521124186
                   trihelix   1 rWtkqevlaLiearremeerlr.rgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykki 64 
                                rWt+qe+l+Lie++r +e++ r rg+                   ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki
  Oropetium_20150105_08756A  21 RWTRQEILVLIEGKRVVERTGRgRGRgrgrarlglgggggdttaaAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKI 104
                                8****************9999953335577889999999999999*************************************** PP

                   trihelix  65 kegekkrtsessstcpyfdqle 86 
                                +e+e++  +++    p f  ++
  Oropetium_20150105_08756A 105 REWERG--CGEAAAEPSFWAMR 124
                                *****8..77777889998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-52197IPR009057Homeodomain-like
PROSITE profilePS500906.0752198IPR017877Myb-like domain
PfamPF138371.2E-1021123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSDGGGDAGG GRRGRAQRLP RWTRQEILVL IEGKRVVERT GRGRGRGRGR ARLGLGGGGG  60
DTTAAAEPTK WAAVAEYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG CGEAAAEPSF  120
WAMRNDARKE RRLPGFFDRE VYDILEGRGG GTVGGGSNAA TAAAAVCRLD LEEDVEGRER  180
EKPVLVVGAS ALFSSSXXXX XXXXXXXXXR PHRPVPVAPA LAPAPVSVPV SGTSRRTEVD  240
ELAENSPIQG RQKRQRSGDE GSGSATTDHL QDQLIQILDR SGRMVAAQLE TQNINSQLDR  300
EQRKDQAGSL LGVLGKMADA LYRIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14150RGRGRGRGRA
24151RGRGRGRGRAR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08756A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826049.11e-114trihelix transcription factor ASR3-like isoform X2
SwissprotQ8VZ201e-49ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2S3I6631e-112A0A2S3I663_9POAL; Uncharacterized protein
STRINGSi010590m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.16e-46Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]