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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_08756A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
Trihelix |
| Protein Properties |
Length: 329aa MW: 35586.7 Da PI: 10.3923 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_08756A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 81.2 | 1.4e-25 | 21 | 124 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykki 64
rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki
Oropetium_20150105_08756A 21 RWTRQEILVLIEGKRVVERTGRgRGRgrgrarlglgggggdttaaAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKI 104
8****************9999953335577889999999999999*************************************** PP
trihelix 65 kegekkrtsessstcpyfdqle 86
+e+e++ +++ p f ++
Oropetium_20150105_08756A 105 REWERG--CGEAAAEPSFWAMR 124
*****8..77777889998886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0050777 | Biological Process | negative regulation of immune response |
| GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MSDGGGDAGG GRRGRAQRLP RWTRQEILVL IEGKRVVERT GRGRGRGRGR ARLGLGGGGG 60
DTTAAAEPTK WAAVAEYCRR HGVDRGPVQC RKRWSNLAGD YKKIREWERG CGEAAAEPSF 120
WAMRNDARKE RRLPGFFDRE VYDILEGRGG GTVGGGSNAA TAAAAVCRLD LEEDVEGRER 180
EKPVLVVGAS ALFSSSXXXX XXXXXXXXXR PHRPVPVAPA LAPAPVSVPV SGTSRRTEVD 240
ELAENSPIQG RQKRQRSGDE GSGSATTDHL QDQLIQILDR SGRMVAAQLE TQNINSQLDR 300
EQRKDQAGSL LGVLGKMADA LYRIADKL*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 41 | 50 | RGRGRGRGRA |
| 2 | 41 | 51 | RGRGRGRGRAR |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
