PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08699A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 507aa    MW: 53466.8 Da    PI: 7.7157
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08699AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.76.3e-18119208186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                                +Wt+  +  L++a++++ e+l+rg+l++ +We+v++++     ++   +s +qCk+k++nl+kryk + ++  +  s++ s+++
  Oropetium_20150105_08699A 119 EWTDGAISSLLDAYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKTSGVKSVEQCKNKIDNLKKRYKVECQRLAGSGSGTASHWA 202
                                5*************************************7765333445799***************988888888899999*** PP

                   trihelix  81 yfdqle 86 
                                +f+++e
  Oropetium_20150105_08699A 203 WFKKME 208
                                *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-20117210No hitNo description
Gene3DG3DSA:3.40.1160.109.3E-74256499IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.441264500IPR015963Uridylate kinase, bacteria
SuperFamilySSF536335.76E-54264499IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.88E-108267500No hitNo description
PfamPF006968.9E-19267479IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MASCDDDFGL LGDDAHPAPP PQAATAQQPA GSAPQLCFAD AAAAASATAG NFAPAQEESN  60
HHAERAKAAH PGKRGREEFS SDGGEYSSYI NSSGGGGKKG RGGGGGGGGA SDYRKDREEW  120
TDGAISSLLD AYTDRFEQLN RGNLRGRDWE DVAAAVTDGQ GKTSGVKSVE QCKNKIDNLK  180
KRYKVECQRL AGSGSGTASH WAWFKKMEQI VGNSASPASS KPLVASDDDK ARQQPQHGSK  240
RYSVSSIAPP AAVSASRSNS FSNPKWKRVL LKIGGTALAG EAPQNVDPKV IMLIAREVQV  300
ACHHGVQVAI VVGGRNIFCG DNWAAATGTD RASTYPIGMM ASVMNSVLLQ ASLEKIGVET  360
RVQTALMMQE VAEPYIRRRA IRHLEKGRVV IFGGIGAGIG NPLFTTDTAA ALRASEINAD  420
VVLKGIVGDG EYGCPPRTNS NTSFEHISFR ELATRGFSRM DLTAITCCEE NNIPVVIFNM  480
LEPGNISRAI CGDQIGTLVD QSGRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A9e-652644995238uridylate kinase
1z9d_B9e-652644995238uridylate kinase
1z9d_C9e-652644995238uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103GGKKGRGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08699A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349019.10.0uncharacterized protein LOC100383551
TrEMBLA0A1D6EBV20.0A0A1D6EBV2_MAIZE; Aspartate/glutamate/uridylate kinase family protein
STRINGPavir.Gb01778.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-154Trihelix family protein