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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08691A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 136aa MW: 14443 Da PI: 10.3074 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 134.2 | 3.1e-42 | 66 | 135 | 2 | 70 |
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPP+kkkPvskkklkreklkqGv++PGe Oropetium_20150105_08691A 66 NVVIEEVsKGLNPGMIVLLVVASFLLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 135 56777877*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 9.0E-8 | 67 | 135 | No hit | No description |
Pfam | PF04689 | 3.9E-39 | 71 | 135 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MAEQFADSAS GVNFGASVLG NVRSSPSGVE GNPGCPSVTL FLPLKLAMLP WEAPAALRSD 60 VTFHNNVVIE EVSKGLNPGM IVLLVVASFL LLFFVGNYAL YVYAQKTLPP KKKKPVSKKK 120 LKREKLKQGV SAPGE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08691A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633609.1 | 1e-24 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 9e-26 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A1E5V3L5 | 6e-24 | A0A1E5V3L5_9POAL; Uncharacterized protein (Fragment) | ||||
TrEMBL | K3Y9Y8 | 6e-24 | K3Y9Y8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Gb01773.1.p | 9e-25 | (Panicum virgatum) | ||||
STRING | Si011030m | 1e-24 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08691A |
Publications ? help Back to Top | |||
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