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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_08542A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
MYB |
| Protein Properties |
Length: 356aa MW: 38782.1 Da PI: 7.356 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_08542A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 46 | 93 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT +Ed++lv++++++G g+W++ ar g++Rt+k+c++rw++yl
Oropetium_20150105_08542A 46 RGPWTVDEDLILVNYIAEHGDGRWNALARAAGLKRTGKSCRLRWLNYL 93
89********************************************97 PP
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| 2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 99 | 142 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg +T++E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
Oropetium_20150105_08542A 99 RGDFTADEQLLILDLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 142
899*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MVLQQHQQIS TGVASKTTRR PGPGSPPPPR KATXXXXXXX XXXXRRGPWT VDEDLILVNY 60
IAEHGDGRWN ALARAAGLKR TGKSCRLRWL NYLRPDVKRG DFTADEQLLI LDLHSRWGNR 120
WSKIAQQLPG RTDNEIKNYW RTRVQKHARQ LNCDVNSRQF RDAMTYLWMP RLAERAAASC 180
SHHSSQQQQH SAIAGGSCGD AHKSPCLSAL TTTTSPARGA DPAACLAANT NSYYQSPGGG 240
ASGSSSCVVP SSSSSDSSLT STESSSTAAV AAHEAEKNAH GHDDDICWAT TTQQGADLHE 300
FWTSAAAALP VEEPMSDVQD LTGWVQGFSD EGISFSSDAH SSSSLWSLDD IWRMQ*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ728414 | 1e-121 | KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds. |
| Publications
? help Back to Top |
- Ahn IP,Kim S,Kang S,Suh SC,Lee YH
Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
Phytopathology, 2005. 95(11): p. 1248-55
[PMID:18943354] - Campos-Soriano L,García-Martínez J,San Segundo B
The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
Mol. Plant Pathol., 2012. 13(6): p. 579-92
[PMID:22212404] - Yokotani N, et al.
Role of the rice transcription factor JAmyb in abiotic stress response.
J. Plant Res., 2013. 126(1): p. 131-9
[PMID:22847900] - Wang D, et al.
Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
[PMID:26740780] - Fred AK,Kiswara G,Yi G,Kim KM
Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
[PMID:26869604]
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