PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08394A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 486aa    MW: 51425.4 Da    PI: 4.99
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08394AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16322368455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRRdriN+++  L++l+P++      K +Ka++L +A+eY+ksLq
  Oropetium_20150105_08394A 322 VHNLSERRRRDRINEKMRALQQLIPNC-----NKADKASMLDEAIEYLKSLQ 368
                                5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.962318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-17321372No hitNo description
SuperFamilySSF474591.3E-20321380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-22322376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-14322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MNQFVPDWSN MGDNSRPLGE DDDLIELLWC NGHVVMQSQT NRKLPPRPEK PPAPPGPNPT  60
TPTTAAAPVA APTQEDEAGV WFPFALADSL DNKDIFSDLF CEPPPPPPPA VIGKPCCTED  120
VSPEEDEGGS GACGLMPPPK STHHLSCCSR QQTTISIGGD DDLSELVRAA GRGRKKAEAS  180
SSSMVSVSVS AIGSSICGSN QVVVPRGTPD TALPSAVGSA NAIKNADGRG RGRDRDRAGG  240
GHEATVASSS GRSNGRFGAA TTTEEPTSTT SNRSSKRKRL DTEEEDAQSP SEDAESESAA  300
AAAACEPPXX XXXXXXXXXX EVHNLSERRR RDRINEKMRA LQQLIPNCNK ADKASMLDEA  360
IEYLKSLQMQ VQMMWMGSGI AAPPVMFPGV HQYLPRMGVG TMPRMPPFMA PQPPVNPVPL  420
SAAVGITEPY AHYLGVNHLQ PTPTQHFVQG VSYYPQQNPA ALHMPASGTA AAPGPESAPN  480
TGPDP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326331ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08394A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0605054e-74AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698353.10.0transcription factor PIF1 isoform X2
TrEMBLA0A368SH291e-179A0A368SH29_SETIT; Uncharacterized protein
STRINGSi035110m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-31phytochrome interacting factor 3