PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08369A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB
Protein Properties Length: 287aa    MW: 32819.7 Da    PI: 10.2308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08369AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10556147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                               ++rWT eE   l  +v+++G g W++I +  +      +R+  ++k++w++ 
  Oropetium_20150105_08369A  5 KQRWTSEEKAALRAGVERHGVGKWRAILQDPQfcstlCHRSNVDLKDKWRNM 56
                               79**********************************999***********96 PP
2Myb_DNA-binding29.91.3e-09102152247
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                                ++WT eE   l  +v+++G g W+ I +  +       R+  ++k++w++ 
  Oropetium_20150105_08369A 102 QKWTSEEKAALRAGVAKHGVGKWNVILKDPQfsstlCYRSNIHLKDKWRNM 152
                                79********************************9978***********95 PP
3Myb_DNA-binding23.41.4e-07165193230
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIart 30 
                                +rWT eE+  l  +v+++G g W+ I + 
  Oropetium_20150105_08369A 165 QRWTSEEQNSLRAGVAKHGVGKWNVILKD 193
                                8*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.166161IPR017930Myb domain
SuperFamilySSF466891.22E-15362IPR009057Homeodomain-like
SMARTSM007172.3E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13562IPR009057Homeodomain-like
PfamPF002491.1E-7556IPR001005SANT/Myb domain
CDDcd116606.80E-19657No hitNo description
PROSITE profilePS512947.42196157IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-1297154IPR009057Homeodomain-like
SuperFamilySSF466894.13E-1499155IPR009057Homeodomain-like
SMARTSM007172.0E-4100155IPR001005SANT/Myb domain
CDDcd116601.27E-17102153No hitNo description
PfamPF002491.1E-6102152IPR001005SANT/Myb domain
PROSITE profilePS500905.378159209IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-8160208IPR009057Homeodomain-like
SMARTSM007179.3163203IPR001005SANT/Myb domain
CDDcd116604.32E-11165209No hitNo description
SuperFamilySSF466894.06E-8166209IPR009057Homeodomain-like
SMARTSM005262.9E-4219280IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150414.857221286IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.77E-10224281IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-12225281IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.1E-9226281IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGPPKQRWTS EEKAALRAGV ERHGVGKWRA ILQDPQFCST LCHRSNVDLK DKWRNMITTA  60
ITSGLRERRR IALREKQSTP ENDDHAMAIS TVTSDVNDKI EQKWTSEEKA ALRAGVAKHG  120
VGKWNVILKD PQFSSTLCYR SNIHLKDKWR NMTSNITSEE KLLEQRWTSE EQNSLRAGVA  180
KHGVGKWNVI LKDPEFCSTL CNRSNIDLKI LGGCFTFVRW LSCRLDNMIM EAIKHLNEPM  240
GSRRTSIANY IKDRYFSSSD LKQLLSAKLK DLATSGKLMK VFFYEK*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08369A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794221e-48HF679422.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB16 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105670.14e-49single myb histone 6
SwissprotC0HIA33e-49SMH6_MAIZE; Single myb histone 6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-37telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]