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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_08274A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 194aa MW: 20537.4 Da PI: 8.282 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.6 | 5.2e-44 | 21 | 120 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++Cv+apyfp ++p+kfanvhk+FGasnv+k+l+++p ++r d++sslvyeA+ar+rdPvyG+v+ i++lq Oropetium_20150105_08274A 21 PCAACKLLRRRCAAGCVFAPYFPPAEPHKFANVHKVFGASNVSKMLQEIPVQHRGDTVSSLVYEANARIRDPVYGCVAAISSLQ 104 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 qq+e+l+a+lal+++e Oropetium_20150105_08274A 105 QQVETLQAQLALAQAE 120 ************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.256 | 20 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-44 | 21 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MKDEFAPVAG KAGASSSASA PCAACKLLRR RCAAGCVFAP YFPPAEPHKF ANVHKVFGAS 60 NVSKMLQEIP VQHRGDTVSS LVYEANARIR DPVYGCVAAI SSLQQQVETL QAQLALAQAE 120 MVRLNMNNAY MAHRLKAARG CGGGGSSTNT GSPSSMSSPK TEQPEAHCKA TPALLDMVVD 180 QPYSMDDSQL WSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 12 | 123 | 2 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 12 | 123 | 2 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_08274A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069911 | 1e-154 | BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds. | |||
GenBank | KJ727650 | 1e-154 | KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466719.1 | 4e-84 | LOB domain-containing protein 4 isoform X1 | ||||
Swissprot | Q8LBW3 | 2e-55 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A3L6TSK8 | 4e-90 | A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like | ||||
STRING | Sb01g012810.1 | 1e-83 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-36 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_08274A |
Publications ? help Back to Top | |||
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