PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_08116A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 264aa    MW: 28261.5 Da    PI: 9.851
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_08116AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.5e-32167223158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                +ep+YVNaKQy++Il+RRq+Rak+e ekk   k rkpylheSRh+hA+rR+Rg+gGrF
  Oropetium_20150105_08116A 167 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-VKVRKPYLHESRHQHAMRRARGNGGRF 223
                                69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.2E-35165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.828166226IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27168223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25169191IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860171191IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDSRPPGGTN LVEPRGHVAA LPHGGGVMQP WWTSGGLGAV SPAVVASGIS LSSNGTVGRA  60
ANGGAGKAGD DARGESSEES PRSGESKDGS ISQDKNHATS QIPALVSEYL TPYTPLELNQ  120
SIASATYQYP DPYYAGMVGP YGAQPGSHFQ LHGLTHSRMP LPLEISEEPV YVNAKQYHGI  180
LRRRQSRAKA ELEKKAVKVR KPYLHESRHQ HAMRRARGNG GRFLNTKKID NGTPNGKAEP  240
NKGEQTSEHI HLPPDLQLRQ KEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21167231266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_08116A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795066.11e-133nuclear transcription factor Y subunit A-9-like
TrEMBLA0A2S3IJ321e-131A0A2S3IJ32_9POAL; Uncharacterized protein
STRINGPavir.J08102.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.24e-33nuclear factor Y, subunit A7