PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07869A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 290aa    MW: 30494.4 Da    PI: 6.8075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07869AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08139183554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h+++Er RR+ri +++  L++l+P+       K + a++L +  +Y+k L
  Oropetium_20150105_07869A 139 HSIAERLRRERIAERMRALQDLVPNT-----NKTDRAAMLDEILDYVKFL 183
                                99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-15132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-10132188No hitNo description
PROSITE profilePS5088815.796134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14136194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-6139183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAGQPPPPQG TEDDFFDQFF SVAAGGSYSA AAAGGGRAAG DQPFSLALSL DGATEASGSG  60
KRIGGDAEGG KADRDAVQLP GLFSPVFGGG VQPPHLRPNP PPQVFHAQQP KQGGTGVGAQ  120
PPAPRPKVRA RRGQATDPHS IAERLRRERI AERMRALQDL VPNTNKTDRA AMLDEILDYV  180
KFLRLQVKVL SMSRLGGAGA VAQLVSDIPL SVKGEASDSG GKQQVWEKWS TDGTEKQVAK  240
LMEDDIGAAM QFLQSKALCM MPISLAMAIY DTQQSQDGQP VKPEPNTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07869A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734110.0EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152044.11e-171uncharacterized protein LOC100285681
SwissprotO227684e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLB6U8461e-170B6U846_MAIZE; BHLH transcription factor
STRINGGRMZM2G004356_P011e-170(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]