PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_07680A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 238aa MW: 24905 Da PI: 6.5833

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_07680A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30.7	6.8e-10	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vk+Ltl+hvkSHLQ+YR+ Oropetium_20150105_07680A 1 MNVKDLTLAHVKSHLQMYRT 20 9******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-8	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MNVKDLTLAH VKSHLQMYRT VKSTDRSPHI TTGEALLEPQ QRTATGMMKL VAVEAAAAAE 60 GRGSLVPAVV LPTCDNMVGS PAAAAATTSA AHFICAPLQA SPPPPPMHQR RTTDLTAAAL 120 EKGVAIVDPS LHRSQKHNYS SPGEVQQDPS RQQAAAAHQE EVNGHTAAVV GLHASVEAAV 180 AATNISSPAS SSSPSLASLD LLTTDDMYAP NLEISLGRQD WNNMAAHAEE LSLLKYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_07680A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020393441.1	4e-41	probable transcription factor GLK2
TrEMBL	A0A3L6SBG0	3e-40	A0A3L6SBG0_PANMI; Putative transcription factor RL9
STRING	ORUFI03G36810.1	4e-40	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-10	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_07680A