PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07393A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 499aa    MW: 53589.1 Da    PI: 9.7574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07393AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067698123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ Cgk F r  nL+ H r H
  Oropetium_20150105_07393A 76 YVCEVCGKGFQRDQNLQLHRRGH 98
                               9********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-77598No hitNo description
Gene3DG3DSA:3.30.160.604.7E-67698IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.8227698IPR007087Zinc finger, C2H2
SMARTSM003550.00817698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM0035538118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4141173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-7148173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MMLKDLASIQ QXXXXXXXXX XENMSNLTSA SGDQASVSSH PLPPPSKKKR SLPGNPDPDA  60
EVIALSPRTL MATNRYVCEV CGKGFQRDQN LQLHRRGHNL PWKLKQRNPK EAARKKVYVC  120
PEPGCVHHDP ARALGDLTGI KKHFSRKHGE KKWKCERCAK RYAVQSDWKA HSKVCGTREY  180
RCDCGTLFSR HVSSFSFLPS SRRTRVASVC RRDSFITHRA FCDALAEESA RAVAGQHPGM  240
LFSHAAGLQL PPSVLDTPQQ LPLGGGHNGL SLQEMCLKRE QQQQQLAPSW LTPQQQMEMP  300
AGGAGNSSSV FGSARLDQQE YVGSSTPPDS STQPAAGLTF GFSPSSAAAS AAHMSATALL  360
QKAAQMGATL SRPSNQGQMA GAHSTSATTT NAATASTPAT AATTSNVTST RPNFVGASHF  420
GAANERADRE TXXXXXXXXX XNDGLTRDFL GLRAFSHGDI LSIAGFNPCM SSTSSAAAAA  480
AAAYEQGHQS SKQPWHHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-30149231364Zinc finger protein JACKDAW
5b3h_F6e-30149231364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102115KLKQRNPKEAARKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07393A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509710.0AK250971.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968516.10.0protein indeterminate-domain 7
TrEMBLA0A3L6R1260.0A0A3L6R126_PANMI; Uncharacterized protein
STRINGPavir.Ea00243.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-102indeterminate(ID)-domain 7