PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07278A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 352aa    MW: 37530.3 Da    PI: 6.0433
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07278AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.61.1e-12136187140
                    G2-like   1 kprlrWtpeLHerFveaveqLGGse............kAtPktilelmkvkg 40 
                                k+r++W+peLH+rFv+a++ LGG++            +AtPk+i+elmk   
  Oropetium_20150105_07278A 136 KARRCWSPELHRRFVNALQILGGAQdklnsfcflankVATPKQIRELMKKYR 187
                                68*********************743333333333337**********9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.76E-6133192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-12134188IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-8136187IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSSSSPSDLT LDYKPNGGAY ASSTTTPKET TEHPLPIDTT LGAALDGQRN GGAFLPFAKD  60
NKQDAVAAAL PELGLAPAEK DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA  120
LEGQQASPAQ PQTHRKARRC WSPELHRRFV NALQILGGAQ DKLNSFCFLA NKVATPKQIR  180
ELMKKYRLHT RRPPAPPTPA TAAPQLVVLG GIWVPPEYAS QAAAPAIYGA HPATQPHYTA  240
AVAAAHQEYY PSPAAVHHLQ HHPAAAMVHR AAAVPPPHAY KAVMAGSPPE SSEGRGSAGV  300
GSVGGSGGVG RDRSESIEEE GEGEEREEED DDEDDMMTAG KADGDESAVK Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07278A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865724e-58BT086572.2 Zea mays full-length cDNA clone ZM_BFc0184N23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819732.15e-77transcription factor NIGTH1
TrEMBLA0A0A9DTM31e-84A0A0A9DTM3_ARUDO; Uncharacterized protein
STRINGSi001230m2e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-23G2-like family protein