PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07182A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 272aa    MW: 31189.8 Da    PI: 11.0579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07182AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.8e-12555146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                               ++rWT+eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Oropetium_20150105_07182A  5 KQRWTPEEEAALRAGVARHGVGNWRTILKDPEfsstlCYRSNVDLKDKWRN 55
                               79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.308161IPR017930Myb domain
SuperFamilySSF466892.87E-16259IPR009057Homeodomain-like
SMARTSM007172.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-14556IPR009057Homeodomain-like
PfamPF002494.8E-9556IPR001005SANT/Myb domain
CDDcd116603.45E-20657No hitNo description
SuperFamilySSF467851.9E-16119194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.2E-10119184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.0E-17119194IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.615121189IPR005818Linker histone H1/H5, domain H15
PfamPF005382.4E-10125182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGVPKQRWTP EEEAALRAGV ARHGVGNWRT ILKDPEFSST LCYRSNVDLK DKWRNMNVIV  60
TASSSREKGR TGVKKTRPPK SNDQPMTIGT VASDADDVTV DVKPIASMSA EAWTIPNPKR  120
SNSRIDNVIM EAIKNLKEPT GSHRTTIANY IEEQYWPPSD FDHILSAKLK DLTTSGKLIK  180
VNRKYRIAPS PQSPKIALLE DIQREPFKGG SEDIKTLTRA QLRKLQQLPP EQLQRQRLSW  240
LKLKQLQEKP RRQRRRPRLH RPLQMQQQHR Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RRQRRR
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_07182A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968284.11e-120single myb histone 5
RefseqXP_004968285.11e-120single myb histone 5
RefseqXP_022682871.11e-120single myb histone 5
SwissprotC0HIA31e-113SMH6_MAIZE; Single myb histone 6
TrEMBLA0A1E5VMK11e-119A0A1E5VMK1_9POAL; Single myb histone 6
STRINGPavir.Ia01166.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-60telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]