PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06890A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 171aa MW: 18866.2 Da PI: 5.4271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06890A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	21	72	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 +e+Er+RR+++ ++L +lPk +++ +s+ ls + L +A YIk+L+ Oropetium_20150105_06890A 21 KEIERKRRQEMTRLCAKLAFVLPKkQYSSRSRDaLSQMGSLDEAAAYIKKLE 72 79********************8888888888*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.823	15	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.19E-4	20	76	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-9	20	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.94E-7	20	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	21	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MSNNRGSSRS RTAPVVVVER KEIERKRRQE MTRLCAKLAF VLPKKQYSSR SRDALSQMGS 60 LDEAAAYIKK LEERESTSVA TSSNDASSEE AATDDEAVAA PPPVVVEVRQ HDDDGSSLDM 120 VLISSVERPF KLHEVVTVLE EEGAEIINAN FSATGLLLKN RQRSKEFLKD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	28	ERKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06890A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457514.2	2e-49	transcription factor bHLH162
TrEMBL	A0A1B6Q2F7	5e-48	A0A1B6Q2F7_SORBI; Uncharacterized protein
STRING	Sb03g008570.1	9e-52	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06890A