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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_06862A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 333aa MW: 36899.5 Da PI: 6.1018 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06862A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.2 | 6.4e-53 | 20 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGfrFhP+dee+++ yL++kv +++++ ++ ++d++k+ePw+Lp ++ +e+ewyfF+++d+ky+tg r+nrat++gyWk
Oropetium_20150105_06862A 20 LPPGFRFHPSDEEIITSYLRPKVLDHNFTS-LAVGDADLNKTEPWELPLIANMGENEWYFFCRNDRKYPTGFRANRATEAGYWK 102
79*************************988.67***************8778899***************************** PP
NAM 85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
atgkdke++++ +++l+g+kktLvfykgrapkg+kt+Wvmheyrl
Oropetium_20150105_06862A 103 ATGKDKEIYRSaatESTLIGMKKTLVFYKGRAPKGVKTNWVMHEYRL 149
*********998877788***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MEDHQPEQQG RIGGANGLEL PPGFRFHPSD EEIITSYLRP KVLDHNFTSL AVGDADLNKT 60
EPWELPLIAN MGENEWYFFC RNDRKYPTGF RANRATEAGY WKATGKDKEI YRSAATESTL 120
IGMKKTLVFY KGRAPKGVKT NWVMHEYRLP NHRVWAVCRV FHKCSSNNNN NNNNAPELTT 180
PASEPANDDM TMGRDSGVDS RSMSFPVPTK FPMESEDFTM DFSAPFYFAD STSPMLPAPS 240
PMVGMDSMLH KMNTGPFVDT MAPTQPMSFY HQVGIGTSSD CNFMAQPDSK PTLMLPGDGR 300
VSPNQTSAAE TSALTTAKPL AATAANIDNI WK*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-49 | 18 | 166 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-49 | 18 | 166 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-49 | 18 | 166 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-49 | 18 | 166 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 1e-49 | 18 | 166 | 18 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 1e-49 | 18 | 166 | 15 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 1e-49 | 18 | 166 | 15 | 168 | NAC domain-containing protein 19 |
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