 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_06798A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 394aa MW: 41142.1 Da PI: 8.3604 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06798A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.8 | 1.8e-52 | 25 | 155 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84
lppGfrFhPtdeelv++yL +k ++ + ++++evd++++ePw+Lp+++k +ekewyfFs rd+ky+tg r+nrat++gyWk
Oropetium_20150105_06798A 25 LPPGFRFHPTDEELVSFYLVRKSLDSGFCG-RAFAEVDLNRCEPWELPERAKMGEKEWYFFSLRDRKYPTGLRTNRATAAGYWK 107
79*************************888.88***************99999******************************* PP
NAM 85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129
atgkd+ev ++ +g+lvg+kktLvfy+grapkg+kt Wvmheyrle
Oropetium_20150105_06798A 108 ATGKDREVRCSsagGGALVGMKKTLVFYRGRAPKGQKTCWVMHEYRLE 155
*********998888899****************************85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010072 | Biological Process | primary shoot apical meristem specification |
| GO:0010160 | Biological Process | formation of organ boundary |
| GO:0010223 | Biological Process | secondary shoot formation |
| GO:0048366 | Biological Process | leaf development |
| GO:0048504 | Biological Process | regulation of timing of organ formation |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 394 aa
Download sequence Send
to blast |
MERFRSGVLG GGLDALVGSG AGGDLPPGFR FHPTDEELVS FYLVRKSLDS GFCGRAFAEV 60
DLNRCEPWEL PERAKMGEKE WYFFSLRDRK YPTGLRTNRA TAAGYWKATG KDREVRCSSA 120
GGGALVGMKK TLVFYRGRAP KGQKTCWVMH EYRLEGTYAY NHFPGSTRDE WVIARVFQKP 180
GEVPPARKNN RLVGLASGGD ASCFSDSTSA SVGGGGASAS SAPPRPLVTD ASSLFAAADG 240
GETGAAAGSY GYGANNSNLV TGRELVPCFS TATTDAATLG IGQYNAPAPL AIEPPPPPPP 300
QAFFTGLRSL HDTSNSNGSI HHLPLFLSSG ASSALMMSGG GGGGAHHHHH WGPLSAGMDA 360
VKIEGGVSVG RALAPPQMAV GPGQLDGAYA WGF*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-51 | 25 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-51 | 25 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-51 | 25 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-51 | 25 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 8e-51 | 25 | 179 | 20 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 7e-51 | 25 | 179 | 17 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 7e-51 | 25 | 179 | 17 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
