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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Oropetium_20150105_06595A |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family |
HD-ZIP |
Protein Properties |
Length: 162aa MW: 18053.2 Da PI: 6.9464 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Oropetium_20150105_06595A | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 44.8 | 2.1e-14 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k
Oropetium_20150105_06595A 1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 39
6999**********************************9 PP
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2 | HD-ZIP_I/II | 102.5 | 3.6e-33 | 1 | 77 | 17 | 93 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++l++
Oropetium_20150105_06595A 1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQLEK 77
599999******************************************************************99986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MFATQTKLEP RQKLQLARDL GLQPRQVAIW FQNKRARWKS KQLEREYSAL RDDYDALLCS 60 YESLKKEKHA LLKQLEKLAE MLQEPGPNYS GNANAGDDAR KGAGSACMKE EEFSDVVRHA 120 PYSSLEGGAH FADDDSGALF RPSPQPSAAG FTASGPPDHQ PF
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT087258 | 1e-104 | BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds. |