 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_06595A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 162aa MW: 18053.2 Da PI: 6.9464 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06595A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 44.8 | 2.1e-14 | 1 | 39 | 18 | 56 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+F+ + ++ +++ +LA+ lgL+ rqV +WFqN+Ra++k
Oropetium_20150105_06595A 1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWK 39
6999**********************************9 PP
|
| 2 | HD-ZIP_I/II | 102.5 | 3.6e-33 | 1 | 77 | 17 | 93 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+F +++kLep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++l++
Oropetium_20150105_06595A 1 MFATQTKLEPRQKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKHALLKQLEK 77
599999******************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MFATQTKLEP RQKLQLARDL GLQPRQVAIW FQNKRARWKS KQLEREYSAL RDDYDALLCS 60
YESLKKEKHA LLKQLEKLAE MLQEPGPNYS GNANAGDDAR KGAGSACMKE EEFSDVVRHA 120
PYSSLEGGAH FADDDSGALF RPSPQPSAAG FTASGPPDHQ PF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT087258 | 1e-104 | BT087258.1 Zea mays full-length cDNA clone ZM_BFb0020F23 mRNA, complete cds. |
