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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_06569A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
MYB |
| Protein Properties |
Length: 272aa MW: 29871.4 Da PI: 5.4191 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06569A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.5 | 1.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEd +l++ + G +W+++++ g+ R++k+c++rw +yl
Oropetium_20150105_06569A 14 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
89******************************99************97 PP
|
| 2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 70 | 110 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
T E++ +d++++lG++ W++Ia++++ gRt++++k++w++
Oropetium_20150105_06569A 70 LTDAEEQVVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNT 110
5899***************.*********.***********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGRQPCCDKL GVKRGPWTAE EDRKLINFIL TNGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60
LRPDLKRGLL TDAEEQVVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT RIKKKLIKMG 120
IDPVTHEPLD PTGSPATASQ SVVTAESKSN EVTNKQRRPD DARDVSADGS CSLPESSTNT 180
SSTGGSSSSS SHDLQDPLVK WLLEEDPPTG DEPWLSFAGN NVDVDEFNSI AADPSALPWD 240
STTDWLLDYQ DFGLGDSNLV DEVMVVTNSS K*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT041771 | 1e-152 | BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds. |
| GenBank | BT062437 | 1e-152 | BT062437.1 Zea mays full-length cDNA clone ZM_BFb0298A24 mRNA, complete cds. |
| GenBank | HQ858697 | 1e-152 | HQ858697.1 Zea mays clone UT1153 MYB transcription factor mRNA, partial cds. |
