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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_06453A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
NAC |
| Protein Properties |
Length: 217aa MW: 24954.9 Da PI: 8.4361 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06453A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 173.4 | 6.8e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82
lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + ++++ewyfF +rd+ky++g r+nrat++gy
Oropetium_20150105_06453A 6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSRDSEWYFFGPRDRKYPNGCRTNRATRAGY 88
79****************************.99**************84335566899************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
Wk+tgkd++v +++ +g+kktLv+ykgrap+g +t Wvmheyr+
Oropetium_20150105_06453A 89 WKSTGKDRRVSY-QNRSIGMKKTLVYYKGRAPQGLRTGWVMHEYRI 133
***********9.8899***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MAPADLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAEKSFLPSR 60
DSEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRRVSY QNRSIGMKKT LVYYKGRAPQ 120
GLRTGWVMHE YRIEESECDN TMGIQDSYAL CRVFKKNVAF SEIEKQGECS TSKAKGNQEQ 180
PANFGDAGQS SGSNEQSKDN SWMQFIADDL WSNKTK*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-54 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-54 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-54 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-54 | 6 | 157 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swm_B | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swm_C | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swm_D | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swp_A | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swp_B | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swp_C | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 3swp_D | 3e-54 | 6 | 157 | 20 | 169 | NAC domain-containing protein 19 |
| 4dul_A | 3e-54 | 6 | 157 | 17 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 3e-54 | 6 | 157 | 17 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
