PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06436A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 504aa    MW: 52422.1 Da    PI: 8.8926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06436AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-055577123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++C+ C+k F r  nL+ H r H
  Oropetium_20150105_06436A 55 FVCEVCNKGFQREQNLQLHRRGH 77
                               89*******************88 PP
2zf-C2H213.30.00024131153123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k++  +s+ k H +t+
  Oropetium_20150105_06436A 131 WKCDKCNKRYAVQSDWKAHSKTC 153
                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-65477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-75477No hitNo description
PROSITE profilePS5015711.0945577IPR007087Zinc finger, C2H2
SMARTSM003550.00415577IPR015880Zinc finger, C2H2-like
PfamPF121713.2E-55577IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035530096126IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-5119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-7126151No hitNo description
SMARTSM00355110131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAAASSAAFF GLGDTQMQPQ LQSSAAAPAP AAAAADPDAE VIALSPRTLL ATNRFVCEVC  60
NKGFQREQNL QLHRRGHNLP WKLKQKNPKE TRRKVYLCPE PTCVHHDPSR ALGDLTGIKK  120
HYCRKHGEKK WKCDKCNKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD SFITHRAFCD  180
ALARESAQMP PLGAGLYVGT GNMALGAAPQ MSVFGDHHQG SSSAAAAAGG QFDHMIPSPS  240
SSSMFRSQAS ASSPSFFLGG GGGPSSAGGH QDFSEDGGDH SQGSHQSSLL HGGKTTPAGF  300
HGFMQLPEHN QQGGNNANNN GTSLLNLGFF SGNSSGGQDA ARLVMPDQFN GGSNVEHQQQ  360
RSIMASVGNH LGGNFSSLYN SSGSSSAAAA GGGQAQNSAT ALLLKAAQMG STSSNNNGTS  420
ALLRAAGFGG NQGTNRAAGE GSSAAAAHET HFHDLIMNSL AGGSAGMRGV DDGKTRDFLG  480
VSRNPMPAPL GLHIGALDPA QMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33127192368Zinc finger protein JACKDAW
5b3h_F2e-33127192368Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06436A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548650.0AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462813.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_021309955.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLC5X7R90.0C5X7R9_SORBI; Uncharacterized protein
STRINGSb02g032400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-101indeterminate(ID)-domain 5