 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_06412A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
Trihelix |
| Protein Properties |
Length: 339aa MW: 36961 Da PI: 7.558 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_06412A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 39.8 | 1.2e-12 | 25 | 124 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkr 71
+W+++ + L+ea++ ++ +r+klk +W +++ + + + ++p+qCk+k+e+++kry+++ + +
Oropetium_20150105_06412A 25 EWSESGITRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcaedaaasgkPGGNCAKTPNQCKNKIESMKKRYRAESAAVVRA 108
5*******************************9999999999*******9888899*******************998876665 PP
trihelix 72 .tsessstcpyfdqle 86
+ + ++++f +++
Oropetium_20150105_06412A 109 gPAAAGPSWRFFVRMD 124
3577778999999987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDGLPDAXXX XXXXXXXXPP QKRDEWSESG ITRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60
EVSAHCAEDA AASGKPGGNC AKTPNQCKNK IESMKKRYRA ESAAVVRAGP AAAGPSWRFF 120
VRMDGLLKGP AGPGQAQQQQ AELSNNSIDL RAPAKAETVE VVEADFAAQL PPDAGPVTFS 180
DLVHIDANGG SVPEKADKVD NSVQKESRAA DSDAANVSSP RSKVANEDTE ELDKAWDMPK 240
KRKSTELAIA KSIELLASSF LKVEHARMEM YRETERMRIE AEIKKGEMEL KRTEIMAKTH 300
LQIAKLFAKR LKEGGARTGG SSSVTAEVDT LTKKGENG*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137592 | 9e-96 | AC137592.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence. |
| GenBank | AK068834 | 9e-96 | AK068834.1 Oryza sativa Japonica Group cDNA clone:J013159M18, full insert sequence. |
| GenBank | AK103673 | 9e-96 | AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence. |
| GenBank | AP005090 | 9e-96 | AP005090.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1065_E04. |
| GenBank | AP014965 | 9e-96 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 2e-32 | sequence-specific DNA binding transcription factors |
