PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_06336A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YB

Protein Properties

Length: 195aa MW: 21744.7 Da PI: 4.7032

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_06336A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	46.4	9.7e-15	38	128	7	90
NF-YB 7 flPianvsrimkkvlP.......anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 +lP a v r++k l a+ + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl Oropetium_20150105_06336A 38 ELPKAIVRRLVKDKLAhiaggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEIEFSEFVEPL 121 68999999999988862222211344589******************************************************* PP NF-YB 84 kvylkky 90 ++ l+ + Oropetium_20150105_06336A 122 RTSLQAF 128 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-27	37	128	IPR009072	Histone-fold
Pfam	PF00808	6.1E-10	38	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.29E-22	39	128	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MEGEATKESE PQPQATQVQD QDKPAPXXXX XXXXXXXELP KAIVRRLVKD KLAHIAGGEG 60 AEVIVNKDAM AAFAESARIF IHYLSATAND MCKESKRQTI NADDVLKALD EIEFSEFVEP 120 LRTSLQAFVT ELIFGSSDLI FSFALNFLVP EFRNKNAGKR SEANKKQKEK RRKLNEETLS 180 QKENDPADDP ENGD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_06336A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310236.1	4e-76	DNA polymerase epsilon subunit 3
TrEMBL	A0A0A9DZ16	9e-75	A0A0A9DZ16_ARUDO; Uncharacterized protein
TrEMBL	C5X5Y5	1e-74	C5X5Y5_SORBI; Uncharacterized protein
STRING	Pavir.Bb01701.1.p	4e-75	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	6e-34	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_06336A