PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06247A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 464aa    MW: 49027.1 Da    PI: 4.7811
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06247AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.93e-20187234149
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSH 49 
                                k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++ +SH
  Oropetium_20150105_06247A 187 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTMQKYRSH 234
                                6799*****************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.2184243IPR017930Myb domain
SuperFamilySSF466891.42E-11185236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-18185234IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-18187234IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MLAVSPAPCA AAGGDTGVVG MEETAEAIGA VADLDFDFTV DDIDFGDFFL RLEDDGDALP  60
DLEVDPADIF TDFEEIAGGD CGNGVMDQEV PSSASPEDPF VDPSSGGVLP EENTLALVQS  120
DAEEGKGECN QQQVADDEAA AAVNNGGFAA SGGAAVAAEE KSTSSSSQEA ESRRKSSSCK  180
NSHGKKKAKV DWTPELHRRF VQAVEQLGID KAVPSRILEI MGIDSLTMQK YRSHRKHMLA  240
REAEAASWTQ RRQMYATGGA AAAAAVKRPD ANAWTVPTIG FPPPPPAPAA AHPMQHFGRP  300
LHVWGHPTPT VDSSRVPMWP PRHLVPRTPG PPWAPPPPPS DPAAAFWHHH PYMRGPGHMP  360
GQVIAMPMPA ARFPAPPVRG VLPPCPAPMY RPLVPPTLAN KSQQDTQLQL QSHPSSESID  420
AAIGDVLTKP WLPLPLGLKP PSVDSVMGEL QRQGVANVPP ACG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06247A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3185811e-40AF318581.1 Oryza sativa putative transcription factor OsGLK1 (Glk1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812542.10.0probable transcription factor GLK1
SwissprotQ5Z5I41e-151GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLA0A3L6PCE10.0A0A3L6PCE1_PANMI; Putative transcription factor GLK1
STRINGSi006400m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.16e-48GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]