PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_06049A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 328aa    MW: 35883.9 Da    PI: 6.1457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_06049AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.32.4e-43191591128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk...kvka.....eekew.yfFskrdkkyatgkrk 74 
                                lppGfrF+Ptdeel+++yL++k+++  +    v++evd+y++ePwdL p+   +  +     e++ + yfF+ r+ k ++g r+
  Oropetium_20150105_06049A  19 LPPGFRFRPTDEELLTHYLARKAADPGFAP-AVVREVDLYRAEPWDLvPAaatN--GgdgggEDDGCrYFFCARRVKFPSGLRA 99 
                                79*************************888.79**************5443440..244443444556**************** PP

                        NAM  75 nratksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                nrat++gyWk+tgkdk v ++      +g   g+kktLvfy+grapk+ kt+W mheyrl
  Oropetium_20150105_06049A 100 NRATRAGYWKSTGKDKVVAARhgrdgaGGVPLGVKKTLVFYRGRAPKADKTSWAMHEYRL 159
                                ********************96655555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-5017191IPR003441NAC domain
PROSITE profilePS5100550.97819191IPR003441NAC domain
PfamPF023654.0E-2620159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGNDDHRDRL PSTGTPRPLP PGFRFRPTDE ELLTHYLARK AADPGFAPAV VREVDLYRAE  60
PWDLVPAAAT NGGDGGGEDD GCRYFFCARR VKFPSGLRAN RATRAGYWKS TGKDKVVAAR  120
HGRDGAGGVP LGVKKTLVFY RGRAPKADKT SWAMHEYRLV PGHSACSSSQ TFSPRDGAHQ  180
IEWVVCRVFM KKQPPGEASQ QQETVLHPPH GDHLQVFSTD DVKTTQEAAA TAASSEQRNP  240
FNGPDDEAIA PGDHHETNQG LQLQLNHEGL LMVNFPETED DMSSSSALAQ GTLLRQELAA  300
DYSSLDLDGI LPLLLDYEGF PFVHDHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-411919217166NO APICAL MERISTEM PROTEIN
1ut4_B2e-411919217166NO APICAL MERISTEM PROTEIN
1ut7_A2e-411919217166NO APICAL MERISTEM PROTEIN
1ut7_B2e-411919217166NO APICAL MERISTEM PROTEIN
3swm_A3e-411919220169NAC domain-containing protein 19
3swm_B3e-411919220169NAC domain-containing protein 19
3swm_C3e-411919220169NAC domain-containing protein 19
3swm_D3e-411919220169NAC domain-containing protein 19
3swp_A3e-411919220169NAC domain-containing protein 19
3swp_B3e-411919220169NAC domain-containing protein 19
3swp_C3e-411919220169NAC domain-containing protein 19
3swp_D3e-411919220169NAC domain-containing protein 19
4dul_A2e-411919217166NAC domain-containing protein 19
4dul_B2e-411919217166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_06049A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462370.12e-84NAC domain-containing protein 92
RefseqXP_025801567.12e-84NAC domain-containing protein 92-like
SwissprotQ9FLR36e-50NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A1E5UYL65e-92A0A1E5UYL6_9POAL; NAC domain-containing protein 79
STRINGSb02g024530.18e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-46NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]