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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_06021A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 290aa MW: 31768.8 Da PI: 4.6105 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.7e-07 | 33 | 61 | 20 | 48 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 G +W+++++ g+ R++k+c++rw +yl Oropetium_20150105_06021A 33 GQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 6669*********99************97 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.7e-17 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE++ +++++qlG++ W++Ia++++ gRt++++k++w+++ Oropetium_20150105_06021A 70 LSEEEEKTVIELHAQLGNR-WSKIASRLP-GRTDNEIKNHWNTH 111 69*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-11 | 5 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-8 | 8 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.107 | 9 | 61 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.54 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-6 | 32 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.16E-21 | 48 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.291 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-16 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAX XXXXXXXXXL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLRRGLL SEEEEKTVIE LHAQLGNRWS KIASRLPGRT DNEIKNHWNT HIKKKLRNMG 120 IDPATHKPLQ PEAASSSPPQ QPLKQQQQPE DEEKAAASGG SGAGLGTETF STDEVPMVDD 180 IVLPCDDDVI VSSGINTAGS SESSLPSSSS SSSYSAAAPA SSGDSSSSTA AVDGEWPEWA 240 QIMEWPDSMW LDDVVNAPWE FEDPFVTYQR IALFDHPDAW NDSNELELS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_06021A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083735 | 1e-136 | BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds. | |||
GenBank | BT085521 | 1e-136 | BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds. | |||
GenBank | BT085625 | 1e-136 | BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802264.1 | 1e-115 | transcription factor MYB20-like | ||||
Swissprot | Q9C7U7 | 9e-79 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A3L6T8M8 | 1e-116 | A0A3L6T8M8_PANMI; Protein ODORANT1-like | ||||
STRING | Pavir.Ba02148.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 8e-76 | myb domain protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_06021A |
Publications ? help Back to Top | |||
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