 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Oropetium_20150105_05962A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 307aa MW: 33807.2 Da PI: 4.4804 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_05962A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.9 | 8.3e-19 | 93 | 148 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++t+eq+++Le Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa+++
Oropetium_20150105_05962A 93 TTKRRLTAEQVQALELSFEEeKRTLEPERKSELARRLGIAPRQVAVWFQNRRARWR 148
67889**************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 118.1 | 4.9e-38 | 94 | 185 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
krrl++eqv++LE sFeee+ +LeperK+elar+Lg+ prqvavWFqnrRAR+++kqlE+d+++Lk+a+d+l + +++L +++
Oropetium_20150105_05962A 94 TKRRLTAEQVQALELSFEEEKrTLEPERKSELARRLGIAPRQVAVWFQNRRARWRAKQLERDFDRLKAAHDELLAGRDALVADN 177
59****************9999************************************************************** PP
HD-ZIP_I/II 85 eeLreelk 92
++Lr+++
Oropetium_20150105_05962A 178 DRLRSQVV 185
****9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MGDSSRLISS AVPFRAPGGQ MLLFGGGSFR GGGAPIATAG AENGQRKRPL LMSAHEEELH 60
QLHLGLEVPD DDVDQLCGSF EYELHQGAPP ERTTKRRLTA EQVQALELSF EEEKRTLEPE 120
RKSELARRLG IAPRQVAVWF QNRRARWRAK QLERDFDRLK AAHDELLAGR DALVADNDRL 180
RSQVVTLTEK LQATESPASH ESDEQAATET IAMQAAVVFV QLDDEGQLRR ETTADNAVPT 240
QGFSGGNSNP SPESYFAGSP SPEQSSEGDC GDENSVLLQP DAMILLSAVE HATERAEEDS 300
WEWYWN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356850 | 2e-87 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
