 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Oropetium_20150105_05733A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 362aa MW: 38220.1 Da PI: 8.4873 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_05733A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.8 | 1.6e-17 | 185 | 239 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k
Oropetium_20150105_05733A 185 RKKLRLSKEQSAFLEESFKEQATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 239
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 124.8 | 4.1e-40 | 185 | 275 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84
+kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke
Oropetium_20150105_05733A 185 RKKLRLSKEQSAFLEESFKEQATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEL 268
69********************************************************************************** PP
HD-ZIP_I/II 85 eeLreelk 92
+eLr +lk
Oropetium_20150105_05733A 269 AELR-ALK 275
***9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MELGLSLGDT MADAGRDLVL GLGMGMGVVR REDEGGERRS KRGRDEAAAS VSLDLEFGAE 60
RRGRSSPEPP VRLSLLSMVP GLGVPWPSHD SGESFRPGHL EASTRGFDVN RTPSCVDAGA 120
GAXXXXXXXX XXXAGAGGAA AAVSSSPNNS AGSFPTDFSA RGQAGAAADR ACSRASDEDD 180
GGSSRKKLRL SKEQSAFLEE SFKEQATLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL 240
KQTEVDCEYL KRCCETLTEE NRRLQKELAE LRALKTVNPY YMRLPATTLS MCPSCERVAS 300
NSSAPPATIT ATPAPGSAAP APSAGGIGDA APEQRPSSFA ALFSSPLNRP LAAQPQAPAS 360
S*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 183 | 189 | SRKKLRL |
| 2 | 233 | 241 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036447 | 0.0 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. |
| GenBank | KJ726911 | 0.0 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |
