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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Oropetium_20150105_05727A |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family |
C2H2 |
| Protein Properties |
Length: 485aa MW: 51842.8 Da PI: 8.9062 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Oropetium_20150105_05727A | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 20.1 | 1.7e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++Cg+ F r nL+ H r+H
Oropetium_20150105_05727A 69 YVCEICGQGFQRDQNLQMHRRRH 91
9*********************9 PP
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| 2 | zf-C2H2 | 12.6 | 0.00042 | 148 | 169 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C+ C+k + +s++k H++t+
Oropetium_20150105_05727A 148 ACERCSKAYAVHSDYKAHLKTC 169
6*******************98 PP
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| 3 | zf-C2H2 | 10.8 | 0.0015 | 177 | 195 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS
zf-C2H2 5 dCgksFsrksnLkrHirtH 23
dCg++Fsr +++ H+ t+
Oropetium_20150105_05727A 177 DCGRVFSRVESFIEHQDTC 195
9***************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009590 | Biological Process | detection of gravity |
| GO:0009959 | Biological Process | negative gravitropism |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0010031 | Biological Process | circumnutation |
| GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process |
| GO:0048444 | Biological Process | floral organ morphogenesis |
| GO:2000012 | Biological Process | regulation of auxin polar transport |
| GO:2000904 | Biological Process | regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 485 aa
Download sequence Send
to blast |
MLGFCSPAAG SPPDEAMPEP FRSLEIATTA AATTATATTK KKRRPAGTPD PDAEVVSLSP 60
RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH 120
HDPAHALGDL VGIKKHFRRK HSGHRQWACE RCSKAYAVHS DYKAHLKTCG TRGHSCDCGR 180
VFSRVESFIE HQDTCNAGRT RADLSPACGG VAAAGSLQQA PAPAASLSRT ASSTSPSSDV 240
VISQAAWPGP AAMPSSTAAF HRFDQVXXXX XXXXXXXGGH NLELQLMPPS SRSVGTTAAF 300
CRSPRSPAVS SQGNDAAMHL ALSIGGVSGC AADERGCGVL LAAGRANGDE AREQLRQALA 360
EKAAADEARA QAKRHAELAE QELASAKRMR RQAQVELSRA HALREHAVRQ VNATLLQITC 420
LSCRHKFRAR PVPTAGAMSG AEVACSYDVS SVVTEGGDAE VNEPFFGADG GMRRRQAAKL 480
MDVL*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 39 | 43 | KKKRR |
| 2 | 39 | 44 | KKKRRP |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK369631 | 0.0 | AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03. |
| GenBank | AK373595 | 0.0 | AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
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