PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_05690A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 26738.4 Da PI: 6.5124 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.7 | 1e-08 | 165 | 205 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ +L++l+P +K++ a++L +A++Y+k L Oropetium_20150105_05690A 165 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 205 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.675 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-15 | 157 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-14 | 160 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-13 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-6 | 166 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.33E-6 | 178 | 210 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEFDLLNSSP EAQLELMKTM LQLEQLTALD QSLMMTPSMS PPVSPMQTPT AAQSHCGFSP 60 PPYMSTSTIS GTGGTPDGHQ YFAPAAYPAI LTGGGAEQHL QVEDYALSPD ALLGPSSPSS 120 SAADAMREAM FHIAALQPVE IDPESVRPPK RRNVRISKDP QSVAARLRRE RISERIRTLQ 180 RLVPGGTKMD TASMLDEAIH YVKFLKSQVQ NLERAAAATT HRAAALGAAY PAFHTPWQYA 240 LPHAGDM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 151 | RPPKRR |
2 | 165 | 170 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_05690A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956156 | 1e-131 | EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ726974 | 1e-131 | KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957004.1 | 4e-85 | transcription factor bHLH69 | ||||
TrEMBL | A0A3L6T9V0 | 9e-86 | A0A3L6T9V0_PANMI; Transcription factor bHLH69-like | ||||
STRING | Si030966m | 2e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 6e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_05690A |