PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05637A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

ZF-HD

Protein Properties

Length: 275aa MW: 28717.2 Da PI: 9.2742

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05637A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.2	1.5e-31	56	109	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaAC+CHRnFHR+e+ Oropetium_20150105_05637A 56 GRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLDALRCAACNCHRNFHRKESP 109 58***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-28	37	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-29	57	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.3E-29	57	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.752	58	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.84E-21	197	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-33	199	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.1E-26	209	265	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAPLPPVLSS SYETPPQQAA GGAGFVGGGG GVASNKPLPA SEPSSRANKA PGTGGGRYRE 60 CLKNHAVGIG GHAVDGCGEF MAAGEEGTLD ALRCAACNCH RNFHRKESPT SAEGSPAAIV 120 AYGATPHQQF SPYFRTPAGY GFHHHQPLHP MAAPRPLALP STSPHTHSEP RDDGDDLSGM 180 AGPMSALGPL SGMSLGAGPS GSGGSGSGKK RFRTKFTQEQ KDRMLAFAER VGWRIQKHDE 240 AAVQQFCDEV GVKRHVLKVW MHNNKHTLGK KPQS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-28	210	267	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05637A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	1e-100	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957068.1	1e-126	zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-122	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1E5WDK3	1e-131	A0A1E5WDK3_9POAL; Zinc-finger homeodomain protein 1
STRING	Si032496m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05637A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]