PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_05625A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 339aa MW: 35938.4 Da PI: 6.7172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_05625A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.1	1.7e-14	124	175	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ Oropetium_20150105_05625A 124 QRMTHIAVERNRRKQMNEYLAALRSLMPSS---YAQRGDQASIVGGAINFVKELE 175 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.48E-14	122	179	No hit	No description
SuperFamily	SSF47459	1.7E-17	122	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.732	123	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-15	124	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.3E-12	124	175	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	129	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MALEALALSQ QGIHRFGCGA MTGGAWNGLF GGVESVDEGT TDLGAGAGSR DAAAWSSSML 60 LRGFQFQDLD SIPAAAAPPV ATAGSAAGVG QEAQLPAAEA ALPSGRKKRR RTRAVKNKEE 120 AETQRMTHIA VERNRRKQMN EYLAALRSLM PSSYAQRGDQ ASIVGGAINF VKELEQLLQS 180 LQARKQSCQR PADGDNGDTA AFAGFFTFPQ YSMSAAVAPA ATHNDASTSH DGIAAEPGEP 240 GSKPSAVAEV EATMVESHAN LRVLSRRRPR QLLRLVMGLQ GRRLTVLHLN MTSSSHMVLY 300 SFSLKVEDDC QLTCVDDIAT AAHQILEKIE EEQGCSLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	135	RMTHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_05625A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT056041	1e-70	BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBank	EU951970	1e-70	EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
GenBank	KJ728035	1e-70	KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803750.1	1e-130	transcription factor bHLH94-like
Swissprot	Q9C7T4	2e-72	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A2S3H0E0	1e-129	A0A2S3H0E0_9POAL; Uncharacterized protein
STRING	Pavir.Ba01963.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	5e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_05625A

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]